RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KBTBD13C9JR72 458 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 E9PMD0 336 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 M0QX08 132 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TXNDC9O14530 226 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 PRKAB2O43741 272 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ACSL4O60488 711 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SUPT3HO75486 399 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 GMNNO75496 209 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 NOL4O94818 638 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 UBTFL6P0CB48 400 aaPredicted RBP4.74□□□□□ -1.65
USP40-213ENST00000483216 ZCCHC18P0CG32 403 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 THRAP10827 490 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 FDFT1P37268 417 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 IER3P46695 156 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SLCO1A2P46721 670 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 GYG1P46976 350 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 FOLH1Q04609 750 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TMED2Q15363 201 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 MAPRE2Q15555 327 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 BCL2A1Q16548 175 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 MOGQ16653 247 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TCHHL1Q5QJ38 904 aaPredicted RBP4.74□□□□□ -1.65
USP40-213ENST00000483216 LRRC38Q5VT99 294 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 IL23RQ5VWK5 629 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ZNF774Q6NX45 483 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 CASC4Q6P4E1 433 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 LRRC8BQ6P9F7 803 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ZNF841Q6ZN19 808 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 LPCAT2Q7L5N7 544 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 CTAGE3PQ8IX95 158 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TDHQ8IZJ6 230 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ZNF444Q8N0Y2 327 aaPredicted RBP4.74□□□□□ -1.65
USP40-213ENST00000483216 PDIK1LQ8N165 341 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 PRELID2Q8N945 189 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 LEMD2Q8NC56 503 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 KIAA0895Q8NCT3 520 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 GRPEL2Q8TAA5 225 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ACMSDQ8TDX5 336 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SSC4DQ8WTU2 575 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TRUB1Q8WWH5 349 aaKnown RBP4.74□□□□□ -1.65
USP40-213ENST00000483216 MR1Q95460 341 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 LRRC39Q96DD0 335 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 CFAP36Q96G28 342 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 SPATA17Q96L03 361 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 RILPQ96NA2 401 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 AGPAT1Q99943 283 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 ZNF577Q9BSK1 485 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 HMG20AQ9NP66 347 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 IL1RAPQ9NPH3 570 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 PNPLA3Q9NST1 481 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TAS2R1Q9NYW7 299 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 IL20Q9NYY1 176 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TMOD2Q9NZR1 351 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 PSMD13Q9UNM6 376 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 LY75O60449 1722 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 TAF1LQ8IZX4 1826 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 MYH6P13533 1939 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 DUOX1Q9NRD9 1551 aa4.74□□□□□ -1.65
USP40-213ENST00000483216 NFASCO94856 1347 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 RGPD3A6NKT7 1758 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 LAMB1P07942 1786 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 RGPD4Q7Z3J3 1758 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 DLEC1Q9Y238 1755 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 C15orf38-AP3S2A0A0A6YYH1 394 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 C2orf92A0A1B0GVN3 265 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 EVPLLA8MZ36 301 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 FAM25AB3EWG3 89 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 FAM25CB3EWG5 89 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 FAM25GB3EWG6 89 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ZNF732B4DXR9 585 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 FBP2O00757 339 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 COPEO14579 308 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 PFDN6O15212 129 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ALOX15BO15296 676 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 H6PDO95479 791 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 M6PRP20645 277 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 SRD5A2P31213 254 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 GTF2H1P32780 548 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 SLC1A3P43003 542 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 KLK7P49862 253 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 PRELPP51888 382 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 HNRNPFP52597 415 aaKnown RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 CRYBA2P53672 197 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 RPS8P62241 208 aaKnown RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 SRPXP78539 464 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 RELAQ04206 551 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 CNTN1Q12860 1018 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 BFSP1Q12934 665 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ABRQ12979 859 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 NAB1Q13506 487 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 TRIP10Q15642 601 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 TRIP13Q15645 432 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 MAPK11Q15759 364 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 ZBED5Q49AG3 693 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 KCTD21Q4G0X4 260 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 OGFRL1Q5TC84 451 aaPredicted RBP4.73□□□□□ -1.65
USP40-213ENST00000483216 NEPROQ6NW34 567 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 TMEM53Q6P2H8 277 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 FAM47EQ6ZV65 393 aa4.73□□□□□ -1.65
USP40-213ENST00000483216 OTOAQ7RTW8 1153 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms