RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 FAM221BA6H8Z2 402 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 EEF1E1O43324 174 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 BSGP35613 385 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TCTN1Q2MV58 587 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 PYCR3Q53H96 274 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 ANKRD54Q6NXT1 300 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 SYT14Q8NB59 555 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TMEM234Q8WY98 164 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TPSD1Q9BZJ3 242 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 KLRF1Q9NZS2 232 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TESQ9UGI8 421 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 PLCL2Q9UPR0 1127 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 A3GALT2U3KPV4 340 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 NUMA1Q14980 2115 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 A0A1W2PPK0 400 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 A8MV72 311 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 CTDSP2O14595 271 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 CAPNS1P04632 268 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 EN2P19622 333 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 LTB4RQ15722 352 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 RNF113BQ8IZP6 322 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 CYB561A3Q8NBI2 242 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TOE1Q96GM8 510 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 ANKRD19PQ9H560 264 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 EPHA6Q9UF33 1036 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 DIMT1Q9UNQ2 313 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 CD97P48960 835 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 WNT3P56703 355 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.7□□□□□ -0.223e-6■□□□□ 10.8
HDAC6-220ENST00000477528 TMEM215Q68D42 235 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 ZNF582Q96NG8 517 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 FGF22Q9HCT0 170 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 A0A075B6Q4 140 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 PGCP20142 388 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 RAB3BP20337 219 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 KIAA1024LP59773 190 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 HSF2Q03933 536 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 ZC3H14Q6PJT7 736 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 OR5W2Q8NH69 310 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 SGCDQ92629 289 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 PITX2Q99697 317 aa13.7□□□□□ -0.22
HDAC6-220ENST00000477528 SRA1Q9HD15 236 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 USP36Q9P275 1121 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TMEFF2Q9UIK5 374 aaPredicted RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 BRCA1P38398 1863 aaKnown RBP13.7□□□□□ -0.22
HDAC6-220ENST00000477528 TDRD15B5MCY1 1934 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 ZNF750Q32MQ0 723 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 C11orf91Q3C1V1 193 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 MRPL2Q5T653 305 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 MEPCEQ7L2J0 689 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 OR5M3Q8NGP4 307 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 GOT1L1Q8NHS2 421 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SLC7A13Q8TCU3 470 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 ELSPBP1Q96BH3 223 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 GAL3ST1Q99999 423 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 RBM38Q9H0Z9 239 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 ABCG5Q9H222 651 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 TAS2R10Q9NYW0 307 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 CCL27Q9Y4X3 112 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SOX1O00570 391 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SOX2P48431 317 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 PRPS1P60891 318 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 HTRA4P83105 476 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 OR2G6Q5TZ20 316 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 MBOAT2Q6ZWT7 520 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 AKAP1Q92667 903 aaKnown RBP eCLIP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 TTYH2Q9BSA4 534 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 PIGUQ9H490 435 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 INPP5EQ9NRR6 644 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 RLFQ13129 1914 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SLC9B1P1A6NJY1 282 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 C11orf98E9PRG8 122 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 FCRLBQ6BAA4 426 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 ULK3Q6PHR2 472 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 CNIH2Q6PI25 160 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 RBM45Q8IUH3 476 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 OR4F15Q8NGB8 312 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 GINS4Q9BRT9 223 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SPNS1Q9H2V7 528 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 KLHL31Q9H511 634 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 PPIEQ9UNP9 301 aaKnown RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 A0A1W2PQ72 361 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 METTL15A6NJ78 407 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 LRRTM2O43300 516 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 PIPP12273 146 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 CDKN3Q16667 212 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 ODF4Q2M2E3 257 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 MFSD12Q6NUT3 480 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 KCTD18Q6PI47 426 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 PLXDC1Q8IUK5 500 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 LRRC56Q8IYG6 542 aaPredicted RBP13.69□□□□□ -0.22
HDAC6-220ENST00000477528 CD207Q9UJ71 328 aa13.69□□□□□ -0.22
HDAC6-220ENST00000477528 SCN10AQ9Y5Y9 1956 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 BLACEA4D250 179 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 PRKCAP17252 672 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 MMP11P24347 488 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 ADPRHP54922 357 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 RAE1P78406 368 aaKnown RBP13.68□□□□□ -0.22
HDAC6-220ENST00000477528 OCLNQ16625 522 aa13.68□□□□□ -0.22
HDAC6-220ENST00000477528 KIAA1211LQ6NV74 962 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms