RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TIMP3	P35625	211 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ASCL1	P50553	236 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CCR4	P51679	360 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	HPCA	P84074	193 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	MPP2	Q14168	576 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	DPY19L1	Q2PZI1	675 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	FLYWCH1	Q4VC44	716 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	TNFAIP8L3	Q5GJ75	292 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	DCST2	Q5T1A1	773 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ATAD3B	Q5T9A4	648 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CES4A	Q5XG92	561 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	C16orf62	Q7Z3J2	963 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ANKRD46	Q86W74	232 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	WDR75	Q8IWA0	830 aa	Known RBP	10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CLECL1	Q8IZS7	167 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	OR5M1	Q8NGP8	315 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	GOT1L1	Q8NHS2	421 aa	Predicted RBP	10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	RFWD2	Q8NHY2	731 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ZPLD1	Q8TCW7	415 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	NUDT8	Q8WV74	236 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	COQ8B	Q96D53	544 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	STAC	Q99469	402 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	SPOCK3	Q9BQ16	436 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	TUBA1C	Q9BQE3	449 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ACBD3	Q9H3P7	528 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	PIGU	Q9H490	435 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	CALHM2	Q9HA72	323 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	MEAF6	Q9HAF1	191 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	UBQLN4	Q9NRR5	601 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	DUSP22	Q9NRW4	184 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	SIRT3	Q9NTG7	399 aa	Predicted RBP	10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	ASIC5	Q9NY37	505 aa		10.45	□□□□□ -0.74
CPNE1-222	ENST00000473373	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	NPIPA5	A0A0B4J1W7	369 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CD8B2	A6NJW9	211 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	DUXA	A6NLW8	204 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	KDM4E	B2RXH2	506 aa	Predicted RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373		E9PBE3	544 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	NPIPA7	E9PJI5	369 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	HDAC3	O15379	428 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	HCRTR2	O43614	444 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CYP7B1	O75881	506 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	NPIPA8	P0DM63	369 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CPN1	P15169	458 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CTSS	P25774	331 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	RNF144A	P50876	292 aa	Predicted RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	GAS1	P54826	345 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	WDR4	P57081	412 aa	Known RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	HBA1	P69905	142 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	FAM174B	Q3ZCQ3	159 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	AGBL2	Q5U5Z8	902 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	SPATA19	Q7Z5L4	167 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	MISP	Q8IVT2	679 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	GCNT2	Q8N0V5	402 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	TRIML2	Q8N7C3	387 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	CNEP1R1	Q8N9A8	125 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	FADS6	Q8N9I5	356 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	OR5D16	Q8NGK9	328 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	RAB3IL1	Q8TBN0	382 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	LRRC8C	Q8TDW0	803 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	INTS12	Q96CB8	462 aa	Known RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	C1GALT1C1	Q96EU7	318 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	GIMAP5	Q96F15	307 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	LURAP1	Q96LR2	239 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	OR7D2	Q96RA2	312 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	PINK1	Q9BXM7	581 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	HOXD1	Q9GZZ0	328 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	EXD2	Q9NVH0	621 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	NTM	Q9P121	344 aa		10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	MRPS18C	Q9Y3D5	142 aa	Known RBP	10.44	□□□□□ -0.74
CPNE1-222	ENST00000473373	POLQ	O75417	2590 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	OR2M5	A3KFT3	312 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	MBD3L3	A6NE82	208 aa	Predicted RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	SLC22A20	A6NK97	555 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	ALG1L2	C9J202	215 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	LINC01387	J3KSC0	135 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	RNASET2	O00584	256 aa	Known RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	EIF1AY	O14602	144 aa	Known RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	DIAPH2	O60879	1101 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	SMNDC1	O75940	238 aa	Known RBP eCLIP	10.43	□□□□□ -0.74	1e-15	■■■■□ 21.1
CPNE1-222	ENST00000473373	ANP32D	O95626	131 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	TBXA2R	P21731	343 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	EPHA3	P29320	983 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	LCN1	P31025	176 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	CPOX	P36551	454 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	PEX19	P40855	299 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	LHX2	P50458	406 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	ANXA11	P50995	505 aa	Known RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	CASP9	P55211	416 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	GFRA1	P56159	465 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	RPS26	P62854	115 aa	Known RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	OCRL	Q01968	901 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	SNTB1	Q13884	538 aa	Known RBP	10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	GPR68	Q15743	365 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	SPANXN4	Q5MJ08	99 aa		10.43	□□□□□ -0.74
CPNE1-222	ENST00000473373	ARSK	Q6UWY0	536 aa		10.43	□□□□□ -0.74

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