RNA–Protein interactions for RNA: ENST00000464480.1

HMGXB4-205, Transcript of HMG-box containing 4, humanhuman

TSL 2

Gene HMGXB4, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-205ENST00000464480 MED4Q9NPJ6 270 aa2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 UTP6Q9NYH9 597 aaKnown RBP2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 MRPL39Q9NYK5 338 aaKnown RBP2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 ZNF107Q9UII5 783 aaPredicted RBP2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 LAMP5Q9UJQ1 280 aa2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 MMP24Q9Y5R2 645 aa2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 SPACA6W5XKT8 324 aa2.8□□□□□ -1.96
HMGXB4-205ENST00000464480 COL2A1P02458 1487 aaPredicted RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 SF3B1O75533 1304 aaKnown RBP eCLIP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 SAGE2PA6NJ88 616 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 ZSCAN5BA6NJL1 495 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 FAM74A7A6NL05 159 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 FAM220BPB1ANY3 271 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 ANGPT2O15123 496 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 KRT8P05787 483 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 CD55P08174 381 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 SLC35E2P0CK97 266 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TSPY4P0CV99 314 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TSPY10P0CW01 314 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 HSPA5P11021 654 aaKnown RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 EPB41P11171 864 aaKnown RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 IGHV1-2P23083 117 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 PAX7P23759 505 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 ATP5A1P25705 553 aaKnown RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 PTBP1P26599 531 aaKnown RBP eCLIP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 GTF2A1P52655 376 aaPredicted RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 CXCL6P80162 114 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 RGS1Q08116 209 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TMED1Q13445 227 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TAF7Q15545 349 aaPredicted RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 CHI3L2Q15782 390 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 MAPK6Q16659 721 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 GSG1Q2KHT4 349 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 GLYR1Q49A26 553 aaPredicted RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 FAM74A3Q4VXF1 159 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TEX44Q53QW1 395 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 DNAJC21Q5F1R6 531 aaKnown RBP2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 METTL11BQ5VVY1 283 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 VITQ6UXI7 678 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 STAC2Q6ZMT1 411 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 Q6ZR54 194 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 LANCL3Q6ZV70 420 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 DPY19L4Q7Z388 723 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 CADM2Q8N3J6 435 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 GTSF1Q8WW33 167 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 THRSPQ92748 146 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 VPS39Q96JC1 886 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 CCT8L2Q96SF2 557 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 TMEM121Q9BTD3 319 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 RPS10P5Q9NQ39 176 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 MIEF1Q9NQG6 463 aa2.79□□□□□ -1.96
HMGXB4-205ENST00000464480 NINLQ9Y2I6 1382 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 IGHV3-35A0A0C4DH35 117 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ERI2A8K979 691 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 A8MUI8 341 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 MBD3O95983 291 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 PGK1P00558 417 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 OPN1LWP04000 364 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 HBQ1P09105 142 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CLUP10909 449 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 PDHBP11177 359 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 KRT13P13646 458 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 XRCC1P18887 633 aaPredicted RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 GDF1P27539 372 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CDH5P33151 784 aaPredicted RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 MDH2P40926 338 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 MAGEA5P43359 124 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 MAGEA8P43361 318 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 NOVA1P51513 510 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ELP6Q0PNE2 266 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ASAH1Q13510 395 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 TATDN3Q17R31 274 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 USH1GQ495M9 461 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 SLC36A3Q495N2 470 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 PAN3Q58A45 887 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CELF3Q5SZQ8 465 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 UTF1Q5T230 341 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ZNF57Q68EA5 555 aaPredicted RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 C9orf40Q8IXQ3 194 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CD177Q8N6Q3 437 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CSNK1A1LQ8N752 337 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CCDC26Q8TAB7 109 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 NANPQ8TBE9 248 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ADAMTS16Q8TE57 1224 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 MYLPFQ96A32 169 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 C18orf25Q96B23 403 aaPredicted RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 DTNBP1Q96EV8 351 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 C4orf36Q96KX1 117 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CASD1Q96PB1 797 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 TSGA13Q96PP4 275 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 DPH7Q9BTV6 452 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 PAXXQ9BUH6 204 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 DUSP16Q9BY84 665 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 IQCGQ9H095 443 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 CALHM2Q9HA72 323 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 PNO1Q9NRX1 252 aaKnown RBP2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 SLC7A10Q9NS82 523 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 TMOD2Q9NZR1 351 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ANAPC7Q9UJX3 599 aa2.78□□□□□ -1.96
HMGXB4-205ENST00000464480 ATP6V0A2Q9Y487 856 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms