RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 KCNA7Q96RP8 456 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 RHOXF2Q9BQY4 288 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PINK1Q9BXM7 581 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 HDHD5Q9BXW7 423 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TXLNGYQ9BZA5 131 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ANKRA2Q9H9E1 313 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 LRTM1Q9HBL6 345 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 PLSCR4Q9NRQ2 329 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 ATAD3AQ9NVI7 634 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 GIN1Q9NXP7 522 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 MED11Q9P086 117 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 SH3BP4Q9P0V3 963 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 NTMQ9P121 344 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 MCTS1Q9ULC4 181 aaKnown RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 PROCRQ9UNN8 238 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 TESMINQ9Y4I5 508 aa6.38□□□□□ -1.39
VPS41-208ENST00000448833 POLR3HQ9Y535 204 aaPredicted RBP6.38□□□□□ -1.39
VPS41-208ENST00000448833 A0A1W2PQD3 144 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 GJE1A6NN92 205 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SEC14L5O43304 696 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SMPD2O60906 423 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 LYPLA1O75608 230 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 NKX2-2O95096 273 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 CRYGSP22914 178 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 ADSLP30566 484 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 HPCAL1P37235 193 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 FRKP42685 505 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 KIR2DL2P43627 348 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 RFX3P48380 749 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 PRKAG1P54619 331 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 NR1H2P55055 460 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 FOXA1P55317 472 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 CLDN15P56746 228 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 RAC1P63000 192 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 FAM27E3Q08E93 113 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 HSPB3Q12988 150 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 STX5Q13190 355 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 TP53BP2Q13625 1128 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 PON3Q15166 354 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.37□□□□□ -1.39
VPS41-208ENST00000448833 LSM12Q3MHD2 195 aaKnown RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 BHLHB9Q6PI77 547 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 BEND4Q6ZU67 534 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SH2D5Q6ZV89 423 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 ESPNLQ6ZVH7 1005 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SSX8Q7RTT4 187 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 BTLAQ7Z6A9 289 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 MARCH3Q86UD3 253 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 RIBC1Q8N443 379 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 OR6K3Q8NGY3 331 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SLC9A6Q92581 669 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 MOAP1Q96BY2 351 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 GMPPAQ96IJ6 420 aaPredicted RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 PPP3R2Q96LZ3 170 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 WFIKKN1Q96NZ8 548 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 STACQ99469 402 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 TACO1Q9BSH4 297 aaKnown RBP6.37□□□□□ -1.39
VPS41-208ENST00000448833 BDH2Q9BUT1 245 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 BTBD2Q9BX70 525 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 OR10A4Q9H209 315 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 GP6Q9HCN6 339 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 NGBQ9NPG2 151 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 DUSP22Q9NRW4 184 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 EMCNQ9ULC0 261 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 CCL27Q9Y4X3 112 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 SNX8Q9Y5X2 465 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 ARID1AO14497 2285 aa6.37□□□□□ -1.39
VPS41-208ENST00000448833 FLNAP21333 2647 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 DUXAA6NLW8 204 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 EIF1AYO14602 144 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 ADAMDEC1O15204 470 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 NPHS1O60500 1241 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 SNUPNO95149 360 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 FESP07332 822 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 INHBBP09529 407 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FAM153BP0C7A2 387 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 CD53P19397 219 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ATP6V1C1P21283 382 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 TCEA1P23193 301 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 ADH6P28332 368 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 MAP3K8P41279 467 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 EIF1AXP47813 144 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 SUCLG1P53597 346 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 SUMO3P55854 103 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 CARD18P57730 90 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 SLC18A2Q05940 514 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 MAD2L1Q13257 205 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 PDE7AQ13946 482 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 RNPS1Q15287 305 aaKnown RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 ACKR1Q16570 336 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 TMEM44Q2T9K0 475 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 GRAMD1BQ3KR37 738 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 FAM153CQ494X1 144 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 RFTN2Q52LD8 501 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 VWA1Q6PCB0 445 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 ZNF551Q7Z340 670 aaPredicted RBP6.36□□□□□ -1.39
VPS41-208ENST00000448833 SZRD1Q7Z422 152 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 TRABD2AQ86V40 505 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 DDIASQ8IXT1 998 aa6.36□□□□□ -1.39
VPS41-208ENST00000448833 KIRREL3Q8IZU9 778 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms