RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS29-202ENST00000447578 GTSE1Q9NYZ3 720 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 HACD3Q9P035 362 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 GRID1Q9ULK0 1009 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.63□□□□□ -1.83
VPS29-202ENST00000447578 SMCHD1A6NHR9 2005 aa3.63□□□□□ -1.83
VPS29-202ENST00000447578 TRBV4-1A0A0J9YWV2 114 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 EXOC1LA0A1B0GW35 172 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MTMR11A4FU01 709 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ASB14A6NK59 587 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CCT8L1PA6NM43 557 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SIGLEC16A6NMB1 481 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 GOLGA8MH3BSY2 632 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 M0QYV0 167 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CST8O60676 142 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CYTIPO60759 359 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ZG16O60844 167 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 LRP3O75074 770 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SPAG7O75391 227 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 VPS26AO75436 327 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CSDE1O75534 798 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 TXNDC12O95881 172 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 KRT6BP04259 564 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 LGALS2P05162 132 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 PCCBP05166 539 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 APRTP07741 180 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 KRT7P08729 469 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ZCCHC18P0CG32 403 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MCF2P10911 925 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CEACAM1P13688 526 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FCARP24071 287 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ACKR3P25106 362 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ITGA3P26006 1051 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 OR1D2P34982 312 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CDKN2BP42772 138 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 KRT6CP48668 564 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 HNMTP50135 292 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SLC26A2P50443 739 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CCL11P51671 97 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 VCPP55072 806 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 MYBPC1Q00872 1141 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 OTUD4Q01804 1114 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 SP3Q02447 781 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SLC25A11Q02978 314 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 PDIA2Q13087 525 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 GPR17Q13304 367 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 PPIL2Q13356 520 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MSLNQ13421 630 aaPredicted RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 GPR50Q13585 617 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 HEPACAMQ14CZ8 416 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ZKSCAN8Q15776 578 aaPredicted RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 DUSP5Q16690 384 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 HADHQ16836 314 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 TFDP3Q5H9I0 405 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 TECRLQ5HYJ1 363 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 TCEAL6Q6IPX3 200 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FAM159AQ6UWV7 190 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 TMEM207Q6UWW9 146 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CENPUQ71F23 418 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FCRLAQ7L513 359 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ZER1Q7Z7L7 766 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 YRDCQ86U90 279 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 PIGZQ86VD9 579 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MISPQ8IVT2 679 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 KLHDC8BQ8IXV7 354 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 KIRREL3Q8IZU9 778 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ELMOD1Q8N336 334 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 RIBC1Q8N443 379 aaPredicted RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 CCDC185Q8N715 623 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 NIPA2Q8N8Q9 360 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 BANPQ8N9N5 519 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MINDY2Q8NBR6 621 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 UBA3Q8TBC4 463 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ACTL9Q8TC94 416 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 DQX1Q8TE96 717 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 PHYHIPQ92561 330 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CPB2Q96IY4 423 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MAGED4Q96JG8 741 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 TTC25Q96NG3 672 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 UHRF2Q96PU4 802 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CPXM1Q96SM3 734 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 S1PR3Q99500 378 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 PAIP2Q9BPZ3 127 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 CCM2Q9BSQ5 444 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 TMEM121Q9BTD3 319 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ELOVL4Q9GZR5 314 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SLC26A1Q9H2B4 701 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CYP3A43Q9HB55 503 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 SLC40A1Q9NP59 571 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 FGFR1OP2Q9NVK5 253 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 NKIRAS1Q9NYS0 192 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ZNF319Q9P2F9 582 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ERVK-18Q9QC07 812 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 ATXN10Q9UBB4 475 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 HMGXB4Q9UGU5 601 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 PCSK1NQ9UHG2 260 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 LGALS13Q9UHV8 139 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 CYTH4Q9UIA0 394 aa3.62□□□□□ -1.83
VPS29-202ENST00000447578 MRTO4Q9UKD2 239 aaKnown RBP3.62□□□□□ -1.83
VPS29-202ENST00000447578 ELF5Q9UKW6 265 aaPredicted RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms