RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SELENOWP63302 87 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 KCNJ10P78508 379 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 CHRNB3Q05901 458 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 OR1C1Q15619 314 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 ZNF141Q15928 474 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 GRAMD1BQ3KR37 738 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 CYBRD1Q53TN4 286 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 PDZK1Q5T2W1 519 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 PGM2L1Q6PCE3 622 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 CYP2R1Q6VVX0 501 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 C16orf47Q6ZP98 133 aaPredicted RBP9.28□□□□□ -0.92
CD44-207ENST00000425428 ZNF550Q7Z398 422 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 RANBP3LQ86VV4 465 aaPredicted RBP9.28□□□□□ -0.92
CD44-207ENST00000425428 CYP4Z1Q86W10 505 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 SPPL2CQ8IUH8 684 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 AQP12AQ8IXF9 295 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 OR52E4Q8NGH9 312 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 PSMF1Q92530 271 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 HAS2Q92819 552 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 DOHHQ9BU89 302 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 OSBPL11Q9BXB4 747 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 ADNPQ9H2P0 1102 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 ZNF552Q9H707 407 aaPredicted RBP9.28□□□□□ -0.92
CD44-207ENST00000425428 ANKRD10Q9NXR5 420 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 B4GALT7Q9UBV7 327 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 SLC7A8Q9UHI5 535 aa9.28□□□□□ -0.92
CD44-207ENST00000425428 BOKQ9UMX3 212 aaPredicted RBP9.28□□□□□ -0.92
CD44-207ENST00000425428 ZNF443Q9Y2A4 671 aaPredicted RBP9.28□□□□□ -0.92
CD44-207ENST00000425428 NCOR2Q9Y618 2525 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 TRAV17A0A0B4J275 112 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 SERINC4A6NH21 518 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 AP3D1O14617 1153 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 SCO2O43819 266 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 SLC25A12O75746 678 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 DNAJB5O75953 348 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 NADKO95544 446 aaPredicted RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 OXSR1O95747 527 aaPredicted RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 C1QCP02747 245 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 CAPNS1P04632 268 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 MSX1P28360 303 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 GCKP35557 465 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 CD96P40200 585 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 SLC6A8P48029 635 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 PCBP3P57721 371 aaKnown RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 RHDQ02161 417 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 TUBA3CQ13748 450 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 TBR1Q16650 682 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 ZNF791Q3KP31 576 aaPredicted RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 IFI44LQ53G44 452 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 LCN8Q6JVE9 175 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 TUBA3EQ6PEY2 450 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 PSD4Q8NDX1 1056 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 TOR1AIP2Q8NFQ8 470 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 OR10G3Q8NGC4 313 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 SNRNP27Q8WVK2 155 aaKnown RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 GEMIN6Q8WXD5 167 aaKnown RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 JSRP1Q96MG2 331 aaPredicted RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 SMAD5Q99717 465 aaKnown RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 RUBCNLQ9H714 662 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 DCAF13Q9NV06 445 aaKnown RBP9.27□□□□□ -0.92
CD44-207ENST00000425428 RPS6KB2Q9UBS0 482 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 ANAPC2Q9UJX6 822 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 PRDM4Q9UKN5 801 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 AURKCQ9UQB9 309 aa9.27□□□□□ -0.92
CD44-207ENST00000425428 ANKRD33BA6NCL7 494 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ALG1L2C9J202 215 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 SYT5O00445 386 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ZNF264O43296 627 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 EIF4E2O60573 245 aaKnown RBP9.27□□□□□ -0.93
CD44-207ENST00000425428 UGT2B17O75795 530 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 CEACAM4O75871 244 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 MFN2O95140 757 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ANGPTL1O95841 491 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 IGKV1D-16P01601 117 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 IFNW1P05000 195 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 GPIP06744 558 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 CNR1P21554 472 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 CCR4P51679 360 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 RGS8P57771 180 aaPredicted RBP9.27□□□□□ -0.93
CD44-207ENST00000425428 KCNC4Q03721 635 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 FUT5Q11128 374 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 RNF220Q5VTB9 566 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 SLC25A25Q6KCM7 469 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ZFP1Q6P2D0 407 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 TMEM81Q6P7N7 255 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 DHRS4L2Q6PKH6 230 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 CBLL1Q75N03 491 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 C10orf111Q8N326 155 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 SMYD1Q8NB12 490 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 OR4K17Q8NGC6 315 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 OR4C3Q8NH37 302 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 PAQR8Q8TEZ7 354 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 EXTL1Q92935 676 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 SLC35B4Q969S0 331 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 PYURFQ96I23 114 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ZNF597Q96LX8 424 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 FAM173AQ9BQD7 235 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 OLAHQ9NV23 265 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 TUBD1Q9UJT1 453 aa9.27□□□□□ -0.93
CD44-207ENST00000425428 ZMIZ1Q9ULJ6 1067 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms