RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 ZNF226Q9NYT6 803 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 NTMQ9P121 344 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 PTGFRNQ9P2B2 879 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 LOXL2Q9Y4K0 774 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 ATG4BQ9Y4P1 393 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 KLK4Q9Y5K2 254 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 DSPPQ9NZW4 1301 aa12.02□□□□□ -0.49
SMARCB1-203ENST00000407082 A0A0G2JN53 185 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 NTN3O00634 580 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 AP3D1O14617 1153 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 NADKO95544 446 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 AK1P00568 194 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 HMGN2P05204 90 aaKnown RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 POU1F1P28069 291 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 BMXP51813 675 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 LIM2P55344 173 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 RPS26P62854 115 aaKnown RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SKP1P63208 163 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 TNFRSF17Q02223 184 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ST3GAL3Q11203 375 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ST3GAL4Q11206 333 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SQSTM1Q13501 440 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 TRAM2Q15035 370 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SMN1Q16637 294 aaKnown RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 EIPR1Q53HC9 387 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SLC25A30Q5SVS4 291 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 C12orf73Q69YU5 71 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 NIPAL1Q6NVV3 410 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ARMC6Q6NXE6 501 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 FIGLAQ6QHK4 219 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 GDPGP1Q6ZNW5 385 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 OOSP2Q86WS3 158 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 TMCO5AQ8N6Q1 288 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 VANGL1Q8TAA9 524 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 TM4SF19Q96DZ7 209 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ELP4Q96EB1 424 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SH3YL1Q96HL8 342 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 COX4I2Q96KJ9 171 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 MS4A4EQ96PG1 132 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ARMC7Q9H6L4 198 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 MTHFD2LQ9H903 347 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 RLIMQ9NVW2 624 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SPHK1Q9NYA1 384 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 C5AR2Q9P296 337 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 MKLN1Q9UL63 735 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 ERGIC3Q9Y282 383 aa12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 SPTBN1Q01082 2364 aaKnown RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 COL27A1Q8IZC6 1860 aaPredicted RBP12.01□□□□□ -0.49
SMARCB1-203ENST00000407082 OR5K3A6NET4 321 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 H3BN98 237 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 BTN3A3O00478 584 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 PGRMC2O15173 223 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 POU2F1P14859 743 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 POLR2CP19387 275 aaPredicted RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 CERS1P27544 350 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 PEBP1P30086 187 aaKnown RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 PRKAR1BP31321 381 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CSTF2P33240 577 aaKnown RBP eCLIP12□□□□□ -0.49
SMARCB1-203ENST00000407082 SOX6P35712 828 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CASRP41180 1078 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CAPZBP47756 277 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 SMSP52788 366 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 RAB8AP61006 207 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 RHAGQ02094 409 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 C1DQ13901 141 aaKnown RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 IRF3Q14653 427 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 LASP1Q14847 261 aaKnown RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 LARS2Q15031 903 aaKnown RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 RGS21Q2M5E4 152 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 FAM214AQ32MH5 1076 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 KLHL22Q53GT1 634 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 ZNF311Q5JNZ3 666 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 PLAG1Q6DJT9 500 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CDC73Q6P1J9 531 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 C1orf94Q6P1W5 598 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 WDR74Q6RFH5 385 aaPredicted RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 Q6ZNX1 250 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 SLC46A3Q7Z3Q1 461 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 PLXDC1Q8IUK5 500 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 PEX5LQ8IYB4 626 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CYP4Z2PQ8N1L4 340 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 AMER3Q8N944 861 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 DYNC2LI1Q8TCX1 351 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 TANKQ92844 425 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CNRIP1Q96F85 164 aaPredicted RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 ZDHHC12Q96GR4 267 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 TMEM80Q96HE8 168 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 OR7D2Q96RA2 312 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 NUDT22Q9BRQ3 303 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 TWSG1Q9GZX9 223 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 SIAEQ9HAT2 523 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 CHCHD3Q9NX63 227 aaKnown RBP12□□□□□ -0.49
SMARCB1-203ENST00000407082 ACTR10Q9NZ32 417 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 FOXJ2Q9P0K8 574 aa12□□□□□ -0.49
SMARCB1-203ENST00000407082 MDC1Q14676 2089 aaKnown RBP11.99□□□□□ -0.49
SMARCB1-203ENST00000407082 TRBV4-1A0A0J9YWV2 114 aa11.99□□□□□ -0.49
SMARCB1-203ENST00000407082 A0A1B0GVG6 124 aa11.99□□□□□ -0.49
SMARCB1-203ENST00000407082 SAGE2PA6NJ88 616 aa11.99□□□□□ -0.49
SMARCB1-203ENST00000407082 D6RAR5 112 aa11.99□□□□□ -0.49
SMARCB1-203ENST00000407082 FFAR1O14842 300 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms