RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SALL4Q9UJQ4 1053 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 RABL2BQ9UNT1 228 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 POLHQ9Y253 713 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 CEP290O15078 2479 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 A0A1W2PPH5 198 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 OR5H15A6NDH6 313 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 OR5H14A6NHG9 310 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 OR5H1A6NKK0 313 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 KLRC4-KLRK1H3BQV0 150 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 JRKO75564 520 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 CEBPBP17676 345 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 DNASE1P24855 282 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 FOXN2P32314 431 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 HTR3AP46098 478 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 WDR4P57081 412 aaKnown RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 APOFQ13790 326 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 MSMO1Q15800 293 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 CTC1Q2NKJ3 1217 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 MANEALQ5VSG8 457 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 ASRGL1Q7L266 308 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 ITFG2Q969R8 447 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 SGK3Q96BR1 496 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 SLC41A3Q96GZ6 507 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 PHOX2BQ99453 314 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 GINS3Q9BRX5 216 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 ST6GALNAC5Q9BVH7 336 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 TMEM59Q9BXS4 323 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 TP63Q9H3D4 680 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 SOX17Q9H6I2 414 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 PELI2Q9HAT8 420 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 OR6C2Q9NZP2 312 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 LHX6Q9UPM6 363 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 ZNF732B4DXR9 585 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 CRYZL1O95825 349 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 ZNF888P0CJ79 500 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 ETFAP13804 333 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 RAB3AP20336 220 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 AFF3P51826 1226 aaKnown RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 WDR5P61964 334 aaKnown RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 CTBSQ01459 385 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 SOX4Q06945 474 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 TMEM176BQ3YBM2 270 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 LCN10Q6JVE6 187 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 GOLM1Q8NBJ4 401 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 OR5D16Q8NGK9 328 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 FBXW5Q969U6 566 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 MALSU1Q96EH3 234 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 FAM46AQ96IP4 442 aaKnown RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 NSUN5Q96P11 429 aaKnown RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 MGLLQ99685 303 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 DPH2Q9BQC3 489 aaPredicted RBP6.79□□□□□ -1.32
UPF2-203ENST00000397053 PAAF1Q9BRP4 392 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 SIX2Q9NPC8 291 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 INIPQ9NRY2 104 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 PLIN4Q96Q06 1357 aa6.79□□□□□ -1.32
UPF2-203ENST00000397053 BLACEA4D250 179 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PRKYO43930 277 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC43A1O75387 559 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 RFPL1O75677 317 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PPP1R3DO95685 299 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PVRP15151 417 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 RAB3BP20337 219 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ITGB7P26010 798 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 IL3RAP26951 378 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CD34P28906 385 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR1D4P47884 311 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MTNR1AP48039 350 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC25A11Q02978 314 aaKnown RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 SQSTM1Q13501 440 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SPATS1Q496A3 300 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC22A6Q4U2R8 563 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 NADSYN1Q6IA69 706 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ZNF529Q6P280 563 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 MOB3CQ70IA8 216 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ZNF367Q7RTV3 350 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ZFP41Q8N8Y5 198 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 OR4D6Q8NGJ1 314 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 GPR148Q8TDV2 347 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PTERQ96BW5 349 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CCDC32Q9BV29 185 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 EGLN1Q9GZT9 426 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ZNF395Q9H8N7 513 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 TM7SF3Q9NS93 570 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CXXC1Q9P0U4 656 aaPredicted RBP6.78□□□□□ -1.32
UPF2-203ENST00000397053 SLC35A3Q9Y2D2 325 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TEX264Q9Y6I9 313 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 USP32Q8NFA0 1604 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 ABCA6Q8N139 1617 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 LRRC30A6NM36 301 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 YKT6O15498 198 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TNFSF12O43508 249 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 IGHG1P01857 330 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 CRHBPP24387 322 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 PTAFRP25105 342 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TACR3P29371 465 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 HTR5AP47898 357 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 TAS2R20P59543 309 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 DNAJB13P59910 316 aa6.78□□□□□ -1.32
UPF2-203ENST00000397053 RPL23AP62750 156 aaKnown RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms