RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GPR45Q9Y5Y3 372 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SIP14410 1827 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SLC1A7O00341 560 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 LILRB5O75023 590 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 TGM1P22735 817 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 ARPC4P59998 168 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SELENBP1Q13228 472 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SNTA1Q13424 505 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SELPLGQ14242 412 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 RFX4Q33E94 735 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 C19orf48Q6RUI8 117 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 SPATC1Q76KD6 591 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 NDNFQ8TB73 568 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 OR2A5Q96R48 311 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 TTTY10Q9BZA0 68 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 OR10A5Q9H207 317 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CXorf36Q9H7Y0 433 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 C11orf16Q9NQ32 467 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 CALML5Q9NZT1 146 aa9.6□□□□□ -0.87
COL6A3-205ENST00000392004 LOC100130705A0A1B0GUX0 176 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 BCKDKO14874 412 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 STX11O75558 287 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 PAICSP22234 425 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 EIF1AXP47813 144 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 PPP5CP53041 499 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 FZD5Q13467 585 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 GFOD2Q3B7J2 385 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 FCRL6Q6DN72 434 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ERICH5Q6P6B1 374 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ASCL5Q7RTU5 278 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CYP4Z2PQ8N1L4 340 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ITPAQ9BY32 194 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 C6orf62Q9GZU0 229 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SEC61A2Q9H9S3 476 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 MCCC2Q9HCC0 563 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF639Q9UID6 485 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ISPDA4D126 451 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 TBX1O43435 398 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 GP1BBP13224 206 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 GDF1P27539 372 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 NKX2-5P52952 324 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 UGT2B15P54855 530 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CHRNEQ04844 493 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 UGT3A2Q3SY77 523 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 C10orf62Q5T681 223 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 TAAR9Q96RI9 348 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 TMA7Q9Y2S6 64 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 RALGAPA2Q2PPJ7 1873 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 RALGAPA1Q6GYQ0 2036 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 FAM20BO75063 409 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CCNKO75909 580 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SEMA3DO95025 777 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 MFN2O95140 757 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ITGA2P17301 1181 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CCNOP22674 350 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 EIF2S3P41091 472 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 PIN1Q13526 163 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 GBX1Q14549 363 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CSRP2Q16527 193 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 COX20Q5RI15 118 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 PDZK1Q5T2W1 519 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 B3GNTL1Q67FW5 361 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SLC16A12Q6ZSM3 486 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 NETO1Q8TDF5 533 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ZFPM2Q8WW38 1151 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SFXN2Q96NB2 322 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SCNM1Q9BWG6 230 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 SP140LQ9H930 580 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 NPPAP01160 153 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 IL12AP29459 219 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 UBE2IP63279 158 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CXADRP78310 365 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 RCAN2Q14206 197 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 TAF13Q15543 124 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 NPTX1Q15818 432 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 NDUFAF6Q330K2 333 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 TMEM225Q6GV28 225 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 CLIP4Q8N3C7 705 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 HORMAD2Q8N7B1 307 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 OR4D9Q8NGE8 314 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 OR6K6Q8NGW6 343 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF486Q96H40 463 aaPredicted RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 IL4I1Q96RQ9 567 aa9.59□□□□□ -0.87
COL6A3-205ENST00000392004 KAT8Q9H7Z6 458 aaKnown RBP9.59□□□□□ -0.87
COL6A3-205ENST00000392004 OR2A25A4D2G3 310 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 FOXE1O00358 373 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 TFECO14948 347 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 XPNPEP2O43895 674 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CTNSO60931 367 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 GABARAPO95166 117 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CCDC159P0C7I6 412 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 CD40LGP29965 261 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 PEBP1P30086 187 aaKnown RBP9.58□□□□□ -0.88
COL6A3-205ENST00000392004 IFNGR2P38484 337 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 NR4A2P43354 598 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 VMACQ2NL98 169 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 ZNF385BQ569K4 471 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 C9orf135Q5VTT2 229 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 C1orf94Q6P1W5 598 aa9.58□□□□□ -0.88
COL6A3-205ENST00000392004 VRK2Q86Y07 508 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms