RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 BIRC5O15392 142 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 TNFRSF21O75509 655 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 TNFSF13O75888 250 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 SERPINE1P05121 402 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 CRHP06850 196 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 EPXP11678 715 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 PRPS1L1P21108 318 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 TPD52P55327 224 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 LASP1Q14847 261 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 CHI3L2Q15782 390 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 OR2A2Q6IF42 318 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 LUZP2Q86TE4 346 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 LINC01560Q8TB33 94 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 JADE3Q92613 823 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 OTUB1Q96FW1 271 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 ZIM3Q96PE6 472 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 CLEC4MQ9H2X3 399 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 PIGUQ9H490 435 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 ZNF395Q9H8N7 513 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 UBQLN4Q9NRR5 601 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 PACSIN3Q9UKS6 424 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 SNX8Q9Y5X2 465 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 AP4B1Q9Y6B7 739 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 F8P00451 2351 aa19.57■□□□□ 0.72
CCDC28B-201ENST00000373602 TM9SF1O15321 606 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 SEC14L5O43304 696 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 C6orf47O95873 294 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 DHRS4L1P0CG22 281 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 CCT3P49368 545 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 CLDN20P56880 219 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 C21orf58P58505 322 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 ABCE1P61221 599 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 POU6F2P78424 691 aaPredicted RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 EMX2Q04743 252 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 MAD2L1Q13257 205 aaPredicted RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 SMU1Q2TAY7 513 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 LSM12Q3MHD2 195 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 TNFAIP8L3Q5GJ75 292 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 CDC73Q6P1J9 531 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 ZNF781Q8N8C0 355 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 OR56A1Q8NGH5 318 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 FIG4Q92562 907 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 BHLHE41Q9C0J9 482 aaPredicted RBP19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 CXorf36Q9H7Y0 433 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 GALNT8Q9NY28 637 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 ASIC5Q9NY37 505 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 ZNF175Q9Y473 711 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 MPDZO75970 2070 aa19.56■□□□□ 0.72
CCDC28B-201ENST00000373602 A0A087WZY1 265 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 A8MXE2 369 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 GMFGO60234 142 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 G6PDP11413 515 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 CPA2P48052 419 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 OCRLQ01968 901 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 CCNJQ5T5M9 372 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 CDC20BQ86Y33 519 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 MISPQ8IVT2 679 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 METTL25Q8N6Q8 603 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 GATSQ8NAP1 163 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 SFXN5Q8TD22 340 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 CDS1Q92903 461 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 STARD4Q96DR4 205 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 DUSP26Q9BV47 211 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 PINK1Q9BXM7 581 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 ACTRT3Q9BYD9 372 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 NEUROD4Q9HD90 331 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 GPATCH2Q9NW75 528 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 NOP53Q9NZM5 478 aaKnown RBP19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 VDAC3Q9Y277 283 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 RAP2CQ9Y3L5 183 aa19.55■□□□□ 0.72
CCDC28B-201ENST00000373602 A0A1W2PQD3 144 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 SHISA8B8ZZ34 492 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 MSTNO14793 375 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 HPGDP15428 266 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 ZNF17P17021 662 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 CLDN8P56748 225 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 RPS3AP61247 264 aaKnown RBP19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 TP53BP2Q13625 1128 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 PDCD2Q16342 344 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 CEP85LQ5SZL2 805 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 CAMKMTQ7Z624 323 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 ACTRT2Q8TDY3 377 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 NINJ1Q92982 152 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 CHMP6Q96FZ7 201 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 ZNF845Q96IR2 970 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 C20orf27Q9GZN8 174 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 FAF1Q9UNN5 650 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 ACTL7BQ9Y614 415 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 AKAP9Q99996 3911 aa19.54■□□□□ 0.72
CCDC28B-201ENST00000373602 C7orf72A4D263 438 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SCDO00767 359 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SOX30O94993 753 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SNUPNO95149 360 aaKnown RBP19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 KRT16P08779 473 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 MYZAPP0CAP1 466 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 ART1P52961 327 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 IST1P53990 364 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 MPP2Q14168 576 aa19.53■□□□□ 0.72
CCDC28B-201ENST00000373602 SPDYE7PQ495Y7 208 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms