RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SRSF4Q08170 494 aaKnown RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 BCL2A1Q16548 175 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 LIN52Q52LA3 116 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 RIF1Q5UIP0 2472 aaKnown RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR52W1Q6IF63 320 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 FAM173BQ6P4H8 233 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CLEC9AQ6UXN8 241 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 ASCL5Q7RTU5 278 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 TMEM185AQ8NFB2 350 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR5AR1Q8NGP9 310 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SCAMP5Q8TAC9 235 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 DNAJA4Q8WW22 397 aaPredicted RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 PGM2Q96G03 612 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 POM121Q96HA1 1249 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SLC46A1Q96NT5 459 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 PAFAH2Q99487 392 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 TTYH2Q9BSA4 534 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 RBCK1Q9BYM8 510 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SPTAN1Q13813 2472 aaKnown RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 ZNF860A6NHJ4 632 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR6C76A6NM76 312 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR7A17O14581 309 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CLPXO76031 633 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR4A8P0C604 315 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 IL1RNP18510 177 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 ATP6V1B2P21281 511 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CD9P21926 228 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SLCO1A2P46721 670 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 LIMK1P53667 647 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 NXPH1P58417 271 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SHC2P98077 582 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CDK5R2Q13319 367 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 NDUFA5Q16718 116 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 NIPAL3Q6P499 406 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SLC16A13Q7RTY0 426 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CBR4Q8N4T8 237 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 MFSD8Q8NHS3 518 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 TEPSINQ96N21 525 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 OR52E6Q96RD3 313 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 RTL8AQ9BWD3 113 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 KCNMB3Q9NPA1 279 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 IL17RBQ9NRM6 502 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 VPS29Q9UBQ0 182 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 MKLN1Q9UL63 735 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 PLEKHM1Q9Y4G2 1056 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CORINQ9Y5Q5 1042 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 SIRT4Q9Y6E7 314 aaPredicted RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 AHCTF1Q8WYP5 2266 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 ZNF487B1APH4 448 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 M0QZQ0 153 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 YY2O15391 372 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GJB3O75712 270 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CBR3O75828 277 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CLDN7O95471 211 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 C1GALT1C1LP0DN25 315 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PSMB4P28070 264 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CSNK1DP48730 415 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TGM4P49221 684 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 AP3S2P59780 193 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ROR2Q01974 943 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ELAVL1Q15717 326 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ARSHQ5FYA8 562 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ATAD3CQ5T2N8 411 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 FAM69AQ5T7M9 428 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 LILRA6Q6PI73 481 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CLEC20AQ6ZU45 233 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SLCO6A1Q86UG4 719 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PHF13Q86YI8 300 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 ATG4AQ8WYN0 398 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 EID2BQ96D98 161 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SEC16BQ96JE7 1060 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GPR21Q99679 349 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GINS3Q9BRX5 216 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 XKR8Q9H6D3 395 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PLEKHJ1Q9NW61 149 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 B3GNT2Q9NY97 397 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SERGEFQ9UGK8 458 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 KLF4O43474 513 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TLX2O43763 284 aaPredicted RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 MPZL2O60487 215 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 TBX18O95935 607 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 ANKRD34CP0C6C1 535 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 EDN3P14138 238 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 IDO1P14902 403 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 KDELR1P24390 212 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PTGIRP43119 386 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GABRB2P47870 512 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR3A4PP47883 348 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 POU3F4P49335 361 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 POU4F2Q12837 409 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 GPR176Q14439 515 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 POU4F3Q15319 338 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CARD17Q5XLA6 110 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 CYB5R2Q6BCY4 276 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR52K2Q8NGK3 314 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 OR56A3Q8NH54 315 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 PNPT1Q8TCS8 783 aaKnown RBP3.83□□□□□ -1.8
USH2A-202ENST00000366942 DCUN1D4Q92564 292 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 MRGPRX1Q96LB2 322 aa3.83□□□□□ -1.8
USH2A-202ENST00000366942 SH3GL2Q99962 352 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms