RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 ZNF586Q9NXT0 402 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 PCDHA9Q9Y5H5 950 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 LCATP04180 440 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 RBMS1P29558 406 aaKnown RBP16.75■□□□□ 0.27
SMAD4-201ENST00000342988 RPS18P62269 152 aaKnown RBP16.75■□□□□ 0.27
SMAD4-201ENST00000342988 OR52E2Q8NGJ4 325 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 FZD10Q9ULW2 581 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 SSUH2Q9Y2M2 353 aa16.75■□□□□ 0.27
SMAD4-201ENST00000342988 CD163L1Q9NR16 1453 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR8J1Q8NGP2 316 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ZNF596Q8TC21 504 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 BLNKQ8WV28 456 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 DUSP9Q99956 384 aaKnown RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SDCBP2Q9H190 292 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 LILRB3O75022 631 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 GMPRP36959 345 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 LARP4Q71RC2 724 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 BRIX1Q8TDN6 353 aaKnown RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 IL1F10Q8WWZ1 152 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 DLC1Q96QB1 1528 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR8U8P0C7N1 319 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 GSK3BP49841 420 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 RPS21P63220 83 aaKnown RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR7G3Q8NG95 312 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 C11orf84Q9BUA3 381 aaPredicted RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR51J1Q9H342 316 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 NIPAL2Q9H841 368 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ZDHHC11Q9H8X9 412 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 LDB2O43679 373 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 MT-ND4LP03901 98 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 C1GALT1C1LP0DN25 315 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 NKPD1Q17RQ9 610 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 TMEM200AQ86VY9 491 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR1S2Q8NGQ3 325 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 CD244Q9BZW8 370 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SRRQ9GZT4 340 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 MCTS1Q9ULC4 181 aaKnown RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SLC22A23A1A5C7 686 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR51F1A6NGY5 319 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR5K4A6NMS3 321 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ANKRD63C9JTQ0 380 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 CRHBPP24387 322 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SLC17A1Q14916 467 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 KIF26BQ2KJY2 2108 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 DRICH1Q6PGQ1 229 aaPredicted RBP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SERPINA11Q86U17 422 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 OR12D1P0DN82 309 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 CDK4P11802 303 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 MEOX1P50221 254 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 FKBP1CQ5VVH2 108 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 PLCXD3Q63HM9 321 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SLC46A3Q7Z3Q1 461 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ANGPTL6Q8NI99 470 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 A0A087WZY1 265 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 SUB1P53999 127 aaKnown RBP eCLIP16.74■□□□□ 0.27
SMAD4-201ENST00000342988 C2orf27AQ580R0 203 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ADGRF3Q8IZF5 1079 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 BIRC7Q96CA5 298 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 DLGAP4Q9Y2H0 992 aa16.74■□□□□ 0.27
SMAD4-201ENST00000342988 ZNF536O15090 1300 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.73■□□□□ 0.27
SMAD4-201ENST00000342988 TMEM150BA6NC51 233 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 EMC8O43402 210 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 LMF1Q96S06 567 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 SH3BGRL2Q9UJC5 107 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 DUOX1Q9NRD9 1551 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 CD63P08962 238 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 ATP4BP51164 291 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 AGFG1P52594 562 aaKnown RBP16.73■□□□□ 0.27
SMAD4-201ENST00000342988 RNLSQ5VYX0 342 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 C10orf82Q8WW14 230 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 KLK6Q92876 244 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 MUL1Q969V5 352 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 SENP5Q96HI0 755 aaPredicted RBP16.73■□□□□ 0.27
SMAD4-201ENST00000342988 MSLNLQ96KJ4 702 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 MRPL15Q9P015 296 aaKnown RBP16.73■□□□□ 0.27
SMAD4-201ENST00000342988 UPK3BL1B0FP48 263 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 UPK3BL2E5RIL1 263 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 TIMP2P16035 220 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 PRAMEF8Q5VWM4 474 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 PRAMEF7Q5VXH5 474 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 TMEM236Q5W0B7 351 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 YIPF1Q9Y548 306 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 TRAPPC2LH3BP13 241 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 SLC6A8P48029 635 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 PLEKHS1Q5SXH7 462 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 KDM8Q8N371 416 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 ARV1Q9H2C2 271 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 MAFBQ9Y5Q3 323 aaPredicted RBP16.73■□□□□ 0.27
SMAD4-201ENST00000342988 LOC102723971A0A1B0GUV8 181 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 GABRR1P24046 479 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 SGSHP51688 502 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 BAXQ07812 192 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 LRR1Q96L50 414 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 MCOLN1Q9GZU1 580 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 ENKD1Q9H0I2 346 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 EGFP01133 1207 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 AAK1Q2M2I8 961 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 FAM217AQ8IXS0 508 aa16.73■□□□□ 0.27
SMAD4-201ENST00000342988 SPARTQ8N0X7 666 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms