RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CD97P48960 835 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TPTEP56180 551 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 CEBPEQ15744 281 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 RAB30Q15771 203 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 DESI1Q6ICB0 168 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PLBD1Q6P4A8 553 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TRIM69Q86WT6 500 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SEC14L4Q9UDX3 406 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 MALT1Q9UDY8 824 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TESQ9UGI8 421 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SCML1Q9UN30 329 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 ALPK2Q86TB3 2170 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 NCR1O76036 304 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SAGP10523 405 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 CELP19835 753 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 LIMK1P53667 647 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 WNT4P56705 351 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 RPS7P62081 194 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 RUNX1T1Q06455 604 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 CBX3Q13185 183 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 LRIT3Q3SXY7 679 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF628Q5EBL2 1059 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 BAHD1Q8TBE0 780 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 CLIP3Q96DZ5 547 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 DCLRE1CQ96SD1 692 aaKnown RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 SLC30A2Q9BRI3 323 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 ABCB9Q9NP78 766 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 H2AFY2Q9P0M6 372 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-201ENST00000341247 PCOLCE2Q9UKZ9 415 aa9.62□□□□□ -0.87
LIMA1-201ENST00000341247 TRAV27A0A087WT01 109 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ASNA1O43681 348 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 IGHV4-34P06331 123 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MRPL3P09001 348 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SMIM10L1P0DMW3 83 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MAKP20794 623 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF10P21506 573 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MLLT11Q13015 90 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 EIF2B5Q13144 721 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ARHGAP11BQ3KRB8 267 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 HEPHL1Q6MZM0 1159 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ARMC6Q6NXE6 501 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 C19orf48Q6RUI8 117 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 CD300LDQ6UXZ3 194 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 RASSF6Q6ZTQ3 369 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 USP53Q70EK8 1073 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SLC44A3Q8N4M1 653 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 CELF2-AS1Q8N7Q2 184 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OR52R1Q8NGF1 315 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 TP53INP1Q96A56 240 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 PEX11GQ96HA9 241 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SMIM10Q96HG1 83 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SECISBP2Q96T21 854 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OR51V1Q9H2C8 321 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 HINT3Q9NQE9 182 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 NDUFB11Q9NX14 153 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MUTYHQ9UIF7 546 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SPACA6W5XKT8 324 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 TAF4O00268 1085 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 DVL2O14641 736 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 STX11O75558 287 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 REM1O75628 298 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 KCNK2O95069 426 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 RORCP51449 518 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 PGDP52209 483 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF136P52737 540 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 RAB15P59190 212 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OR1Q1Q15612 314 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 KLHL22Q53GT1 634 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 EOGTQ5NDL2 527 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OOSP2Q86WS3 158 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 LINC00471Q8N535 108 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 CYB561A3Q8NBI2 242 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OR13C2Q8NGS9 318 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 PPP1R14BQ96C90 147 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 NXF2Q9GZY0 626 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ANKHQ9HCJ1 492 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 C19orf53Q9UNZ5 99 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 C2orf92A0A1B0GVN3 265 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 SLC9B1P1A6NJY1 282 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 GPR75O95800 540 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 GYPBP06028 91 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 LIMS3P0CW19 117 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 LIMS4P0CW20 117 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 NKX2-5P52952 324 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 GAS1P54826 345 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MRPS21P82921 87 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF45Q02386 682 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 PGGHGQ32M88 737 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 NDUFAF6Q330K2 333 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 CCBE1Q6UXH8 406 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 ZNF620Q6ZNG0 422 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 LINC00299Q6ZSB3 139 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 MBOAT2Q6ZWT7 520 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 HCAR1Q9BXC0 346 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 OR52D1Q9H346 318 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 PIGUQ9H490 435 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 FBRSQ9HAH7 460 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 RBMX2Q9Y388 322 aaKnown RBP9.61□□□□□ -0.87
LIMA1-201ENST00000341247 CABIN1Q9Y6J0 2220 aa9.61□□□□□ -0.87
LIMA1-201ENST00000341247 A0A0J9YY10 115 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms