RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 LASP1Q14847 261 aaKnown RBP17.59■□□□□ 0.41
LIME1-201ENST00000309546 PON3Q15166 354 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 SGCBQ16585 318 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 GLYR1Q49A26 553 aaPredicted RBP17.59■□□□□ 0.41
LIME1-201ENST00000309546 OR6Y1Q8NGX8 325 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 FNDC9Q8TBE3 224 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 CAVIN3Q969G5 261 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 SH3YL1Q96HL8 342 aaPredicted RBP17.59■□□□□ 0.41
LIME1-201ENST00000309546 PKNOX2Q96KN3 472 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 FOXC2Q99958 501 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 FBXO34Q9NWN3 711 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 A8MXE2 369 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 SCDO00767 359 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 MSTNO14793 375 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 TNFRSF21O75509 655 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 CRHP06850 196 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 LAMP1P11279 417 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 RPS3AP61247 264 aaKnown RBP17.58■□□□□ 0.4
LIME1-201ENST00000309546 POU6F2P78424 691 aaPredicted RBP17.58■□□□□ 0.4
LIME1-201ENST00000309546 TP53BP2Q13625 1128 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.58■□□□□ 0.4
LIME1-201ENST00000309546 KRT71Q3SY84 523 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 SPDYE7PQ495Y7 208 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 C6orf136Q5SQH8 315 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 CPTPQ5TA50 214 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 IL23RQ5VWK5 629 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 ZCCHC12Q6PEW1 402 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 CDS1Q92903 461 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 TUBGCP3Q96CW5 907 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 DACH2Q96NX9 599 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 OPN3Q9H1Y3 402 aaPredicted RBP17.58■□□□□ 0.4
LIME1-201ENST00000309546 AP4B1Q9Y6B7 739 aa17.58■□□□□ 0.4
LIME1-201ENST00000309546 EIF1AYO14602 144 aaKnown RBP17.57■□□□□ 0.4
LIME1-201ENST00000309546 TYROBPO43914 113 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 C6orf47O95873 294 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 HMGN2P05204 90 aaKnown RBP17.57■□□□□ 0.4
LIME1-201ENST00000309546 NGFRP08138 427 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 TBXA2RP21731 343 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 SERPINB4P48594 390 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 ZNF41P51814 821 aaPredicted RBP17.57■□□□□ 0.4
LIME1-201ENST00000309546 MLC1Q15049 377 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 WDR93Q6P2C0 686 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 PAMR1Q6UXH9 720 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 BTLAQ7Z6A9 289 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 NUDCD3Q8IVD9 361 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 KRTCAP2Q8N6L1 136 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 METTL25Q8N6Q8 603 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 FAM110BQ8TC76 370 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 NUDT8Q8WV74 236 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 STARD4Q96DR4 205 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 PGM2Q96G03 612 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 ATAD3AQ9NVI7 634 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 ZNF175Q9Y473 711 aa17.57■□□□□ 0.4
LIME1-201ENST00000309546 NUP214P35658 2090 aaPredicted RBP17.57■□□□□ 0.4
LIME1-201ENST00000309546 HRNRQ86YZ3 2850 aaPredicted RBP17.57■□□□□ 0.4
LIME1-201ENST00000309546 PRRC2AP48634 2157 aaKnown RBP17.56■□□□□ 0.4
LIME1-201ENST00000309546 UQCRHLA0A096LP55 91 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 WDR91A4D1P6 747 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 CASKO14936 926 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 LYPLA1O75608 230 aaPredicted RBP17.56■□□□□ 0.4
LIME1-201ENST00000309546 HSPA4LO95757 839 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 ZNF17P17021 662 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 ATP6V1C1P21283 382 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 ETV4P43268 484 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 KIR2DL2P43627 348 aaPredicted RBP17.56■□□□□ 0.4
LIME1-201ENST00000309546 EIF1AXP47813 144 aaKnown RBP17.56■□□□□ 0.4
LIME1-201ENST00000309546 RIPPLY3P57055 190 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 FAM27E3Q08E93 113 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 TMEM44Q2T9K0 475 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 GGNQ86UU5 652 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 OR5P2Q8WZ92 322 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 PPP1R36Q96LQ0 422 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 STACQ99469 402 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 NPAS1Q99742 590 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 BTBD2Q9BX70 525 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 PRRG4Q9BZD6 226 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 CXorf36Q9H7Y0 433 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 RNF122Q9H9V4 155 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 HHATLQ9HCP6 504 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 UBQLN4Q9NRR5 601 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 GIN1Q9NXP7 522 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 STOML1Q9UBI4 398 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 NDRG3Q9UGV2 375 aa17.56■□□□□ 0.4
LIME1-201ENST00000309546 ABCA4P78363 2273 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 A0A087WZY1 265 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 RGS16O15492 202 aaPredicted RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 CFLARO15519 480 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 AQP8O94778 261 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 GOSR1O95249 250 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 OPN1LWP04000 364 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 RAF1P04049 648 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 HRGP04196 525 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 FCGR2AP12318 317 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 LCN1P31025 176 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 SOAT1P35610 550 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 KCNJ5P48544 419 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 CCT3P49368 545 aaKnown RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 RNF144AP50876 292 aaPredicted RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 KEAP1Q14145 624 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 CD226Q15762 336 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms