RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NGFRP08138 427 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 LCN1P31025 176 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 CASQ1P31415 396 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 RFX3P48380 749 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 ZNF41P51814 821 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 SLC7A5Q01650 507 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 LCP2Q13094 533 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 UNC50Q53HI1 259 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 SPDYAQ5MJ70 313 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 UBAP2Q5T6F2 1119 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 CPTPQ5TA50 214 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 IKBIPQ70UQ0 350 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 MISPQ8IVT2 679 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 OR2V1Q8NHB1 315 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 NANOS1Q8WY41 292 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 TMEM158Q8WZ71 300 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 HSD17B8Q92506 261 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 ELP4Q96EB1 424 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 REXO5Q96IC2 774 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 ADGRG7Q96K78 797 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 EBPLQ9BY08 206 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 IQCGQ9H095 443 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 LRTM1Q9HBL6 345 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 BARX1Q9HBU1 254 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 MYNNQ9NPC7 610 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 TIGARQ9NQ88 270 aa13.2□□□□□ -0.3
CCDC88B-201ENST00000301897 CR1P17927 2039 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 NDUFB5O43674 189 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 CD5LO43866 347 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 CXCL13O43927 109 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 SNRPAP09012 282 aaKnown RBP13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 NID1P14543 1247 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 IMPDH1P20839 514 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 IL32P24001 234 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 ATP5F1P24539 256 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 AGTR1P30556 359 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 GABRA3P34903 492 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 BTKQ06187 659 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 RNPS1Q15287 305 aaKnown RBP13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 CTU2Q2VPK5 515 aaKnown RBP13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 GRAMD1BQ3KR37 738 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 HBMQ6B0K9 141 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 FAM71E1Q6IPT2 247 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 C8orf74Q6P047 294 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 DNAJC14Q6Y2X3 702 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 GALNT10Q86SR1 603 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 HIPK1Q86Z02 1210 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 CEP70Q8NHQ1 597 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 CDC26Q8NHZ8 85 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 AMDHD1Q96NU7 426 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 TMEM237Q96Q45 408 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 GLIPR2Q9H4G4 154 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 GP6Q9HCN6 339 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 PLCE1Q9P212 2302 aa13.19□□□□□ -0.3
CCDC88B-201ENST00000301897 A0A1W2PP18 115 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 SHISA8B8ZZ34 492 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 TNFSF11O14788 317 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 EIF1P41567 113 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 HTR6P50406 440 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 CARD18P57730 90 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 ETF1P62495 437 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 ZNF844Q08AG5 666 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 SLC29A2Q14542 456 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 IMPG1Q17R60 797 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 ZNF672Q499Z4 452 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 TMEM201Q5SNT2 666 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 NCMAPQ5T1S8 102 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 FAM219BQ5XKK7 198 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 APOOLQ6UXV4 268 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 SSX8Q7RTT4 187 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 TRABD2AQ86V40 505 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 CNPY4Q8N129 248 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 OR6Y1Q8NGX8 325 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 RAB3IL1Q8TBN0 382 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 GPR151Q8TDV0 419 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 SMAP2Q8WU79 429 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 DCAKDQ8WVC6 231 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 OSTF1Q92882 214 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 S100PBPQ96BU1 408 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 METTL2AQ96IZ6 378 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 CDC42EP4Q9H3Q1 356 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 FAIMQ9NVQ4 179 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 FREM1Q5H8C1 2179 aa13.18□□□□□ -0.3
CCDC88B-201ENST00000301897 A0A1W2PRB8 838 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 POC1B-GALNT4F8VUJ3 575 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 H3BQF6 201 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 CLOCKO15516 846 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 GMFGO60234 142 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 DLX3O60479 287 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 OXSR1O95747 527 aaPredicted RBP13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 HSPA4LO95757 839 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 SOD3P08294 240 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 DANCRP0C864 163 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 PRPS2P11908 318 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 HPGDP15428 266 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 ADH6P28332 368 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 PRKAA2P54646 552 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 NAA20P61599 178 aa13.17□□□□□ -0.3
CCDC88B-201ENST00000301897 CKAP4Q07065 602 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms