RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CXorf58Q96LI9 332 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TTYH3Q9C0H2 523 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SEMA4GQ9NTN9 838 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ACSS1Q9NUB1 689 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MED9Q9NWA0 146 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 GPR83Q9NYM4 423 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PCDHGA7Q9Y5G6 932 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ADAMTS9Q9P2N4 1935 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 NPHP4O75161 1426 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TMEM82A0PJX8 343 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FAM159BA6NKW6 160 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CBX4O00257 560 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CACNB4O00305 520 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ADRB3P13945 408 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ITPKBP27987 946 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR1G1P47890 313 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TOB1P50616 345 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MIIPQ5JXC2 388 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CYP4X1Q8N118 509 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FIBCD1Q8N539 461 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR5D14Q8NGL3 314 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 THAP4Q8WY91 577 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 KCNC2Q96PR1 638 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CMKLR1Q99788 373 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SEC61A2Q9H9S3 476 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TARBP1Q13395 1621 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 GABRR3A8MPY1 467 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MSTNO14793 375 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FMO6PO60774 539 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ORM1P02763 201 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MPSTP25325 297 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 IL12BP29460 328 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 BCL6P41182 706 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF133P52736 654 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FOXO4P98177 505 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 KIAA0141Q14154 515 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SLC9A3R2Q15599 337 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SYT6Q5T7P8 510 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PDZD3Q86UT5 571 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TXNRD3Q86VQ6 643 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PARP16Q8N5Y8 322 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TOP6BLQ8N6T0 577 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 DBF4BQ8NFT6 615 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 LHPPQ9H008 270 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 RAB18Q9NP72 206 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 INTS6Q9UL03 887 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ABT1Q9ULW3 272 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 H7BY64 318 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 KNG1P01042 644 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OPN1LWP04000 364 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 CD63P08962 238 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF92Q03936 586 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 GRB10Q13322 594 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ATAT1Q5SQI0 421 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 LIPJQ5W064 366 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MBLAC2Q68D91 279 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 NPAS4Q8IUM7 802 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR52E4Q8NGH9 312 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR13C5Q8NGS8 318 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 XAGE5Q8WWM1 108 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 L3HYPDHQ96EM0 354 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PRAP1Q96NZ9 151 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 COL25A1Q9BXS0 654 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OR2S2Q9NQN1 319 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 EPHA6Q9UF33 1036 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 MTMR11A4FU01 709 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PP2D1A8MPX8 630 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 C1QTNF3-AMACRE9PGA6 284 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TSPAN12O95859 305 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ERVPABLB-1P60509 514 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ERVK-16P61578 105 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SIM1P81133 766 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ACOT1Q86TX2 421 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 PAQR8Q8TEZ7 354 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 HSH2DQ96JZ2 352 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TGIF2Q9GZN2 237 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 A0A1W2PQ45 241 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 A0A1W2PQY0 241 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TYROBPO43914 113 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ACSM4P0C7M7 580 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 EBLN1P0CF75 366 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 DAOP14920 347 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 UQCRC2P22695 453 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TGM1P22735 817 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ZNF136P52737 540 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ERVS71-1P61550 626 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 OPCMLQ14982 345 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 B3GNTL1Q67FW5 361 aaPredicted RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 HSD17B11Q8NBQ5 300 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SLC2A12Q8TD20 617 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 DUSP9Q99956 384 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 DCAF16Q9NXF7 216 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 RAI2Q9Y5P3 530 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SLIT2O94813 1529 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 ALKQ9UM73 1620 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 WDR87Q6ZQQ6 2873 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 FAM74A7A6NL05 159 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 SCAMP3O14828 347 aaKnown RBP4.6□□□□□ -1.67
CSMD3-201ENST00000297405 TACR3P29371 465 aa4.6□□□□□ -1.67
CSMD3-201ENST00000297405 WASP42768 502 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms