RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 PCDHGB5Q9Y5G0 923 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 GMPPBQ9Y5P6 360 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 CENPVL1A0A0U1RR11 272 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 C9J4A7 227 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 OR10H3O60404 316 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 CLIC3O95833 236 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 CLK3P49761 638 aaKnown RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 INSM1Q01101 510 aaPredicted RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 IL1RL1Q01638 556 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 TOP3AQ13472 1001 aaPredicted RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 RBM48Q5RL73 367 aaKnown RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 LANCL3Q6ZV70 420 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 ZNF550Q7Z398 422 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 C9orf40Q8IXQ3 194 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 ZNF440Q8IYI8 595 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 ZNF321PQ8N8H1 164 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 OR8K3Q8NH51 312 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 HDAC2Q92769 488 aaKnown RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 NIPSNAP1Q9BPW8 284 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 ZNF559Q9BR84 538 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 WWTR1Q9GZV5 400 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 NXF5Q9H1B4 397 aaKnown RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 RLIMQ9NVW2 624 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 TUBA8Q9NY65 449 aaPredicted RBP13.11□□□□□ -0.31
SDF2-201ENST00000247020 LOXL2Q9Y4K0 774 aa13.11□□□□□ -0.31
SDF2-201ENST00000247020 NPIPA5A0A0B4J1W7 369 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 TRAPPC13A5PLN9 417 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 CLDN24A6NM45 220 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 CPSF4LA6NMK7 179 aaKnown RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 NPIPA7E9PJI5 369 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 GASTP01350 101 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 NPIPA8P0DM63 369 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ENDOUP21128 410 aaKnown RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 GSTM3P21266 225 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ISL1P61371 349 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 TUBA4AP68366 448 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ALDH6A1Q02252 535 aaKnown RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 APOFQ13790 326 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 SEC23BQ15437 767 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ISXQ2M1V0 245 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 C1orf94Q6P1W5 598 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 PGBD2Q6P3X8 592 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 PODNL1Q6PEZ8 512 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ZNF613Q6PF04 617 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 FAM198BQ6UWH4 519 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 CPEB2Q7Z5Q1 589 aaKnown RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 GLRX5Q86SX6 157 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 SLCO6A1Q86UG4 719 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 SLC34A3Q8N130 599 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 NFAM1Q8NET5 270 aaPredicted RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 NUBPLQ8TB37 319 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ACOT11Q8WXI4 607 aaPredicted RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 VMP1Q96GC9 406 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 SLC41A3Q96GZ6 507 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 TAAR9Q96RI9 348 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 LPAR4Q99677 370 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 CRB3Q9BUF7 120 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 ULBP3Q9BZM4 244 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 KRCC1Q9NPI7 259 aaPredicted RBP13.1□□□□□ -0.31
SDF2-201ENST00000247020 UBQLN4Q9NRR5 601 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 BLOC1S6Q9UL45 172 aa13.1□□□□□ -0.31
SDF2-201ENST00000247020 EXPH5Q8NEV8 1989 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 SERINC4A6NH21 518 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 FRS3O43559 492 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 CNOT3O75175 753 aaKnown RBP13.09□□□□□ -0.31
SDF2-201ENST00000247020 NGFRP08138 427 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 SMIM18P0DKX4 95 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 ATXN8OSP0DMR3 200 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 OSMP13725 252 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 ZNF28P17035 718 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 KRT20P35900 424 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 RFX3P48380 749 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 PNLIPRP2P54317 469 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 CXCR4P61073 352 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 TEKQ02763 1124 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 TCF15Q12870 199 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 KLHL17Q6TDP4 642 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 RAB11FIP2Q7L804 512 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 RNF113BQ8IZP6 322 aaKnown RBP13.09□□□□□ -0.31
SDF2-201ENST00000247020 ZNF786Q8N393 782 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 LSMEM1Q8N8F7 131 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 OR4K5Q8NGD3 323 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 ZNF566Q969W8 418 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 DEPDC7Q96QD5 511 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 UCK2Q9BZX2 261 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 TRIM2Q9C040 744 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 RYDENQ9NUL5 291 aaKnown RBP13.09□□□□□ -0.31
SDF2-201ENST00000247020 DNAJB12Q9NXW2 375 aaKnown RBP13.09□□□□□ -0.31
SDF2-201ENST00000247020 NCDNQ9UBB6 729 aa13.09□□□□□ -0.31
SDF2-201ENST00000247020 A0A087WUU8 490 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 LOC102723996A0A087X1L8 192 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 CCDC187A0A096LP49 1063 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 A0A1W2PQD3 144 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 C4orf47A7E2U8 309 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 IGHEP01854 428 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 TBXA2RP21731 343 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 FUT4P22083 530 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 GGT2P36268 569 aa13.08□□□□□ -0.32
SDF2-201ENST00000247020 POLR2IP36954 125 aaKnown RBP13.08□□□□□ -0.32
SDF2-201ENST00000247020 GABARAPL2P60520 117 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms