RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CASC3O15234 703 aaKnown RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 MRPL3P09001 348 aaKnown RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 HNRNPCL4P0DMR1 293 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ERGP11308 486 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 FPR3P25089 353 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 GCGRP47871 477 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 MTNR1BP49286 362 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 PDX1P52945 283 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 SLC3A1Q07837 685 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 FGFBP1Q14512 234 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 LGALSLQ3ZCW2 172 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 ARHGAP15Q53QZ3 475 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 SFXN4Q6P4A7 337 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 LILRA6Q6PI73 481 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 LRRC28Q86X40 367 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 OR9A2Q8NGT5 310 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 OR5K2Q8NHB8 316 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 PXYLP1Q8TE99 480 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ORAI3Q9BRQ5 295 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 DPCDQ9BVM2 203 aaPredicted RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 SPATA5L1Q9BVQ7 753 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 ZCCHC2Q9C0B9 1178 aaKnown RBP11.57□□□□□ -0.56
NUP88-201ENST00000225696 PELI2Q9HAT8 420 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 FOLH1BQ9HBA9 442 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 MARK1Q9P0L2 795 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 KCNN3Q9UGI6 736 aa11.57□□□□□ -0.56
NUP88-201ENST00000225696 MAGEB4O15481 346 aaPredicted RBP11.56□□□□□ -0.56
NUP88-201ENST00000225696 CHST10O43529 356 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 SOX30O94993 753 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 CFDP00746 253 aaPredicted RBP11.56□□□□□ -0.56
NUP88-201ENST00000225696 PDGFAP04085 211 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 TCRBP04435 133 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 CLUP10909 449 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 ACVR1BP36896 505 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 RFX3P48380 749 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 DGCR2P98153 550 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 ST3GAL3Q11203 375 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 C9orf64Q5T6V5 341 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 ZNF697Q5TEC3 545 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 CXXC5Q7LFL8 322 aaKnown RBP11.56□□□□□ -0.56
NUP88-201ENST00000225696 AMZ2Q86W34 360 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 SIAH3Q8IW03 269 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 LRRC17Q8N6Y2 441 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 KREMEN2Q8NCW0 462 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 DOK4Q8TEW6 326 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 OSTF1Q92882 214 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 TTTY10Q9BZA0 68 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 OR51J1Q9H342 316 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 FBXL4Q9UKA2 621 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 ZMIZ1Q9ULJ6 1067 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 SLC7A7Q9UM01 511 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 MRPS7Q9Y2R9 242 aaKnown RBP11.56□□□□□ -0.56
NUP88-201ENST00000225696 ASB4Q9Y574 426 aa11.56□□□□□ -0.56
NUP88-201ENST00000225696 TEX13CA0A0J9YWL9 993 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 LINC00862A6NCI5 91 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ERI3O43414 337 aaKnown RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 FZD7O75084 574 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 AIFM1O95831 613 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 RAF1P04049 648 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 PRG2P13727 222 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 IL9P15248 144 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 NPR2P20594 1047 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 STOMP27105 288 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 BCL6P41182 706 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 SRP54P61011 504 aaKnown RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 TGM3Q08188 693 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ST3GAL2Q16842 350 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 CDONQ4KMG0 1287 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ZNF782Q6ZMW2 699 aaPredicted RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 WDR88Q6ZMY6 472 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 PLEKHM3Q6ZWE6 761 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 CEACAM19Q7Z692 300 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 SHISA5Q8N114 240 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 FBXL6Q8N531 539 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 RFLNBQ8N5W9 214 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ACBD7Q8N6N7 88 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 OR2T33Q8NG76 320 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 OR10H4Q8NGA5 316 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 OR5W2Q8NH69 310 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 TRMT10AQ8TBZ6 339 aaKnown RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 ACOT11Q8WXI4 607 aaPredicted RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 KISS1RQ969F8 398 aaPredicted RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 SLC41A3Q96GZ6 507 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ZFP3Q96NJ6 502 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 MCHR1Q99705 422 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 DPH1Q9BZG8 443 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 CCDC86Q9H6F5 360 aaKnown RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 NT5DC2Q9H857 520 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ERVMER34-1Q9H9K5 563 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 HMX1Q9NP08 348 aaPredicted RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 C20orf141Q9NUB4 165 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ADAM30Q9UKF2 790 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 ING4Q9UNL4 249 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 GPR34Q9UPC5 381 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 SCN2AQ99250 2005 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 MDC1Q14676 2089 aaKnown RBP11.55□□□□□ -0.56
NUP88-201ENST00000225696 RPS10-NUDT3A0A1W2PQS6 291 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 PRRT4C9JH25 899 aa11.55□□□□□ -0.56
NUP88-201ENST00000225696 NARSO43776 548 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms