RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 NEU3Q9UQ49 428 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ENTPD4Q9Y227 616 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 EXOSC1Q9Y3B2 195 aaKnown RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 SF3B6Q9Y3B4 125 aaKnown RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 NR0B1P51843 470 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 LIM2P55344 173 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 WNT3P56703 355 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 RAB2AP61019 212 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 TAF13Q15543 124 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 DEFB115Q30KQ5 88 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 PLPPR4Q7Z2D5 763 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 LRRTM1Q86UE6 522 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 TMIEQ8NEW7 156 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 OR1S2Q8NGQ3 325 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 THAP4Q8WY91 577 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 IGSF8Q969P0 613 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 CHFRQ96EP1 664 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SLC32A1Q9H598 525 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 MVB12BQ9H7P6 319 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 AK6Q9Y3D8 172 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 TTC3P53804 2025 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 RHPN2P1A8MT19 583 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 F5H0A9 414 aaPredicted RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 MRPL3P09001 348 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 RGRP47804 291 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 TDGQ13569 410 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 LINGO4Q6UY18 593 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 FAM122BQ7Z309 247 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF546Q86UE3 836 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 HS6ST3Q8IZP7 471 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ARRDC4Q8NCT1 418 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 GNPDA2Q8TDQ7 276 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF75AQ96N20 296 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ENKD1Q9H0I2 346 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 FAM124BQ9H5Z6 455 aaPredicted RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ISG20L2Q9H9L3 353 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 KLK11Q9UBX7 282 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 KIAA1217Q5T5P2 1943 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SSC5DA1L4H1 1573 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 G3V3Q6 166 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 M0R3H8 397 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 RGS9O75916 674 aaPredicted RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SNAPINO95295 136 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ANXA2P07355 339 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 RPL3P39023 403 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 GCGRP47871 477 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 NPBWR1P48145 328 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 OR2B8PP59922 312 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SKP2Q13309 424 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 TUSC3Q13454 348 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SLC36A4Q6YBV0 504 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ZBTB2Q8N680 514 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 OR4K5Q8NGD3 323 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 C1orf216Q8TAB5 229 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 CHTF18Q8WVB6 975 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 SORCS1Q8WY21 1168 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 ARHGAP9Q9BRR9 750 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 CACYBPQ9HB71 228 aaKnown RBP13.75□□□□□ -0.21
PTPRA-201ENST00000216877 FBXL3Q9UKT7 428 aa13.75□□□□□ -0.21
PTPRA-201ENST00000216877 OR2AT4A6NND4 320 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 F5H5P2 479 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 SCAMP2O15127 329 aaKnown RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 FADS1O60427 444 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ACP2P11117 423 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 FGF9P31371 208 aaPredicted RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CCINQ13939 588 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CCL14Q16627 93 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 FBXL22Q6P050 247 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 DPPA4Q7L190 304 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 SLC7A13Q8TCU3 470 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 TAS2R10Q9NYW0 307 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CNIH4Q9P003 139 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF282Q9UDV7 671 aaPredicted RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 PCDHB10Q9UN67 800 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 LOC100509620A0A075B734 347 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 J3QLW9 94 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 B3GAT3O94766 335 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 PEX11BO96011 259 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 HPP00738 406 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CD2P06729 351 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 GIPP09681 153 aaPredicted RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF19P17023 458 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CCR8P51685 355 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF140P52738 457 aaPredicted RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 EEF1A1P68104 462 aaKnown RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 EEF1A2Q05639 463 aaKnown RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ANXA8L1Q5VT79 327 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 EEF1A1P5Q5VTE0 462 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 UNQ6126/PRO20091Q6UXV3 157 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 BEND4Q6ZU67 534 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 HAVCR2Q8TDQ0 301 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 ELP5Q8TE02 316 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 SCLYQ96I15 445 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 OR51I1Q9H343 314 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 DDX31Q9H8H2 851 aaKnown RBP13.74□□□□□ -0.21
PTPRA-201ENST00000216877 FBXW2Q9UKT8 454 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 PLEKHA6Q9Y2H5 1048 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 CKAP5Q14008 2032 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 PRODHO43272 600 aa13.74□□□□□ -0.21
PTPRA-201ENST00000216877 OR4Q2P0C623 313 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms