RNA–Protein interactions for RNA: YJR001W

AVT1, Transcript of Vacuolar transporter, yeast

Gene AVT1, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
AVT1	YJR001W	LCB5	Q06147	687 aa	Known RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	SPP382	Q06411	708 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	BRE4	Q07660	1125 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	LAP2	Q10740	671 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	SSK22	P25390	1331 aa	Predicted RBP	4.83	□□□□□ -1.64
AVT1	YJR001W	BNR1	P40450	1375 aa		4.83	□□□□□ -1.64
AVT1	YJR001W	CHC1	P22137	1653 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	RPS6A	P0CX37	236 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	RPS6B	P0CX38	236 aa	Predicted RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	MRP7	P12687	371 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	AEP2	P22136	580 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	SMC1	P32908	1225 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	YLF2	P38746	405 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	BEM4	P39011	633 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	YIL166C	P40445	542 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	RET2	P43621	546 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	HOP2	P53187	214 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	ULP1	Q02724	621 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	CWC21	Q03375	135 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	EIS1	Q05050	843 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	CIA1	Q05583	330 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	ISR1	Q06098	443 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	YDL124W	Q07551	312 aa	Known RBP	4.82	□□□□□ -1.64
AVT1	YJR001W	MDM38	Q08179	573 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	MPC54	Q08550	464 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	SPO21	Q12411	609 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	YOR093C	Q12275	1648 aa		4.82	□□□□□ -1.64
AVT1	YJR001W	SAN1	P22470	610 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	PET309	P32522	965 aa	Predicted RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	DLD1	P32891	587 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	RTT105	P40063	208 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	PXA1	P41909	870 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	ALR2	P43553	858 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	SAE2	P46946	345 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	UPF3	P48412	387 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	ISM1	P48526	1002 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	RPA14	P50106	137 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	APP1	P53933	587 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	GTR1	Q00582	310 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
AVT1	YJR001W	TAF11	Q04226	346 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	YLR287C	Q05881	355 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	DBP9	Q06218	594 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	DRS2	P39524	1355 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	TRM3	Q07527	1436 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	TUF1	P02992	437 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	KAR2	P16474	682 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	GLK1	P17709	500 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	MRPL33	P20084	86 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	FAR1	P21268	830 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	RER1	P25560	188 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	ACP1	P32463	125 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	VPS41	P38959	992 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	DSS1	P39112	969 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	MET13	P53128	600 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	PXR1	P53335	271 aa	Predicted RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	RAD33	Q04231	177 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	YMR018W	Q04364	514 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	TDA9	Q04545	1251 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	ATG38	Q05789	226 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	YLH47	Q06493	454 aa		4.81	□□□□□ -1.64
AVT1	YJR001W	CSR1	Q06705	408 aa	Known RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	RRG1	Q12167	365 aa	Predicted RBP	4.81	□□□□□ -1.64
AVT1	YJR001W	TRP2	P00899	507 aa	Known RBP	4.8	□□□□□ -1.64
AVT1	YJR001W	FLP1	P03870	423 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	VBA3	P25594	458 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	POL4	P25615	582 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	ZUO1	P32527	433 aa	Known RBP	4.8	□□□□□ -1.64
AVT1	YJR001W	SPC29	P33419	253 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
AVT1	YJR001W	CCC2	P38995	1004 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	JEM1	P40358	645 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	QRI7	P43122	407 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	DAN4	P47179	1161 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	ENP2	P48234	707 aa	Known RBP	4.8	□□□□□ -1.64
AVT1	YJR001W	RBG2	P53295	368 aa	Known RBP	4.8	□□□□□ -1.64
AVT1	YJR001W	YAP1802	P53309	568 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	CAF120	P53836	1060 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	ARA2	Q04212	335 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	AGE1	Q04412	482 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	ARR2	Q06597	130 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	SWA2	Q06677	668 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	MRL1	Q06815	381 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	DPH6	Q12429	685 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	SMC6	Q12749	1114 aa		4.8	□□□□□ -1.64
AVT1	YJR001W	HSH49	Q99181	213 aa	Predicted RBP	4.8	□□□□□ -1.64
AVT1	YJR001W	PRT1	P06103	763 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	MST1	P07236	462 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	SWI5	P08153	709 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	PMS1	P14242	873 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	FUR1	P18562	216 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	DPH5	P32469	300 aa	Predicted RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	UBS1	P38290	277 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	YJR096W	P47137	282 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	YLR225C	Q05948	407 aa	Known RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	ESC8	Q08119	714 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	YOR352W	Q08816	343 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	RRP36	Q12481	300 aa	Predicted RBP	4.79	□□□□□ -1.64
AVT1	YJR001W	BNI1	P41832	1953 aa		4.79	□□□□□ -1.64
AVT1	YJR001W	PDR5	P33302	1511 aa	Known RBP	4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms