RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 SMC4Q9NTJ3 1288 aa21.83■■□□□ 1.09
PHGDH-234ENST00000642041 ZBTB1Q9Y2K1 713 aa21.83■■□□□ 1.09
PHGDH-234ENST00000642041 EPHX2P34913 555 aa21.82■■□□□ 1.08
PHGDH-234ENST00000642041 MAP1SQ66K74 1059 aaPredicted RBP21.82■■□□□ 1.08
PHGDH-234ENST00000642041 BICDL1Q6ZP65 573 aa21.82■■□□□ 1.08
PHGDH-234ENST00000642041 EXOC6Q8TAG9 804 aa21.82■■□□□ 1.08
PHGDH-234ENST00000642041 TSR2Q969E8 191 aaKnown RBP21.82■■□□□ 1.08
PHGDH-234ENST00000642041 CNKSR1Q969H4 720 aa21.82■■□□□ 1.08
PHGDH-234ENST00000642041 MBIPQ9NS73 344 aa21.82■■□□□ 1.08
PHGDH-234ENST00000642041 LAS1LQ9Y4W2 734 aaKnown RBP21.82■■□□□ 1.08
PHGDH-234ENST00000642041 THSD7BQ9C0I4 1608 aa21.81■■□□□ 1.08
PHGDH-234ENST00000642041 ECE1P42892 770 aa21.81■■□□□ 1.08
PHGDH-234ENST00000642041 CAPNS2Q96L46 248 aa21.81■■□□□ 1.08
PHGDH-234ENST00000642041 MCOLN1Q9GZU1 580 aa21.81■■□□□ 1.08
PHGDH-234ENST00000642041 VAMP4O75379 141 aa21.8■■□□□ 1.08
PHGDH-234ENST00000642041 TWISTNBQ3B726 338 aaPredicted RBP21.8■■□□□ 1.08
PHGDH-234ENST00000642041 FTSJ3Q8IY81 847 aaKnown RBP21.8■■□□□ 1.08
PHGDH-234ENST00000642041 GPR101Q96P66 508 aaPredicted RBP21.8■■□□□ 1.08
PHGDH-234ENST00000642041 CRBNQ96SW2 442 aa21.8■■□□□ 1.08
PHGDH-234ENST00000642041 SLX4Q8IY92 1834 aa21.8■■□□□ 1.08
PHGDH-234ENST00000642041 COL11A2P13942 1736 aaPredicted RBP21.8■■□□□ 1.08
PHGDH-234ENST00000642041 PLIN1O60240 522 aa21.79■■□□□ 1.08
PHGDH-234ENST00000642041 TAF7Q15545 349 aaPredicted RBP21.79■■□□□ 1.08
PHGDH-234ENST00000642041 STYK1Q6J9G0 422 aa21.79■■□□□ 1.08
PHGDH-234ENST00000642041 PRR5LQ6MZQ0 368 aa21.79■■□□□ 1.08
PHGDH-234ENST00000642041 PRPF40BQ6NWY9 871 aaKnown RBP21.79■■□□□ 1.08
PHGDH-234ENST00000642041 ATF7IPQ6VMQ6 1270 aa21.79■■□□□ 1.08
PHGDH-234ENST00000642041 DZIP1LQ8IYY4 767 aaKnown RBP21.79■■□□□ 1.08
PHGDH-234ENST00000642041 CEMIPQ8WUJ3 1361 aa21.78■■□□□ 1.08
PHGDH-234ENST00000642041 API5Q9BZZ5 524 aaKnown RBP21.78■■□□□ 1.08
PHGDH-234ENST00000642041 DDX21Q9NR30 783 aaKnown RBP eCLIP21.78■■□□□ 1.08
PHGDH-234ENST00000642041 DDX19BQ9UMR2 479 aa21.78■■□□□ 1.08
PHGDH-234ENST00000642041 ZNF541Q9H0D2 1346 aa21.78■■□□□ 1.08
PHGDH-234ENST00000642041 TBC1D9BQ66K14 1250 aa21.77■■□□□ 1.08
PHGDH-234ENST00000642041 B4GALNT3Q6L9W6 998 aa21.77■■□□□ 1.08
PHGDH-234ENST00000642041 MCM10Q7L590 875 aa21.77■■□□□ 1.08
PHGDH-234ENST00000642041 FRAT1Q92837 279 aaPredicted RBP21.77■■□□□ 1.08
PHGDH-234ENST00000642041 HOXB7P09629 217 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 PAXIP1Q6ZW49 1069 aaPredicted RBP21.76■■□□□ 1.07
PHGDH-234ENST00000642041 CENPQQ7L2Z9 268 aaPredicted RBP21.76■■□□□ 1.07
PHGDH-234ENST00000642041 CCDC24Q8N4L8 307 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 SSH1Q8WYL5 1049 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 SLC52A2Q9HAB3 445 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 TSKSQ9UJT2 592 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 SCN11AQ9UI33 1791 aa21.76■■□□□ 1.07
PHGDH-234ENST00000642041 A0A087WZG4 1122 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 SRGNP10124 158 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 EIF5P55010 431 aaKnown RBP21.75■■□□□ 1.07
PHGDH-234ENST00000642041 DCTN1Q14203 1278 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 CYP4F22Q6NT55 531 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 MASTLQ96GX5 879 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 THUMPD2Q9BTF0 503 aaKnown RBP21.75■■□□□ 1.07
PHGDH-234ENST00000642041 TSPYL4Q9UJ04 414 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 MRC1P22897 1456 aa21.75■■□□□ 1.07
PHGDH-234ENST00000642041 RNMTO43148 476 aaKnown RBP21.74■■□□□ 1.07
PHGDH-234ENST00000642041 CA12O43570 354 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 MAP2K2P36507 400 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 TEFQ10587 303 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 VSIG10Q8N0Z9 540 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 C7orf43Q8WVR3 580 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 CASP8AP2Q9UKL3 1982 aa21.74■■□□□ 1.07
PHGDH-234ENST00000642041 SLC39A6Q13433 755 aa21.73■■□□□ 1.07
PHGDH-234ENST00000642041 CCDC93Q567U6 631 aa21.73■■□□□ 1.07
PHGDH-234ENST00000642041 ARFGEF2Q9Y6D5 1785 aa21.73■■□□□ 1.07
PHGDH-234ENST00000642041 PTPRCP08575 1304 aa21.73■■□□□ 1.07
PHGDH-234ENST00000642041 FKBP4Q02790 459 aaKnown RBP eCLIP21.72■■□□□ 1.07
PHGDH-234ENST00000642041 GRM1Q13255 1194 aa21.72■■□□□ 1.07
PHGDH-234ENST00000642041 MVPQ14764 893 aaKnown RBP21.72■■□□□ 1.07
PHGDH-234ENST00000642041 IL17REQ8NFR9 667 aa21.72■■□□□ 1.07
PHGDH-234ENST00000642041 CLUAP1Q96AJ1 413 aa21.72■■□□□ 1.07
PHGDH-234ENST00000642041 CACNA1SQ13698 1873 aa21.72■■□□□ 1.07
PHGDH-234ENST00000642041 ZNF277Q9NRM2 450 aaPredicted RBP21.71■■□□□ 1.07
PHGDH-234ENST00000642041 CACNA1FO60840 1977 aa21.7■■□□□ 1.07
PHGDH-234ENST00000642041 LTBP1Q14766 1721 aa21.7■■□□□ 1.06
PHGDH-234ENST00000642041 FZD9O00144 591 aa21.7■■□□□ 1.06
PHGDH-234ENST00000642041 DGKZQ13574 1117 aa21.7■■□□□ 1.06
PHGDH-234ENST00000642041 GPC2Q8N158 579 aa21.7■■□□□ 1.06
PHGDH-234ENST00000642041 CNBD1Q8NA66 436 aa21.7■■□□□ 1.06
PHGDH-234ENST00000642041 ST5P78524 1137 aa21.69■■□□□ 1.06
PHGDH-234ENST00000642041 CCDC30Q5VVM6 783 aa21.69■■□□□ 1.06
PHGDH-234ENST00000642041 MRPL50Q8N5N7 158 aaKnown RBP21.69■■□□□ 1.06
PHGDH-234ENST00000642041 STK31Q9BXU1 1019 aa21.69■■□□□ 1.06
PHGDH-234ENST00000642041 LGR6Q9HBX8 967 aa21.69■■□□□ 1.06
PHGDH-234ENST00000642041 NOB1Q9ULX3 412 aaKnown RBP21.69■■□□□ 1.06
PHGDH-234ENST00000642041 TLL2Q9Y6L7 1015 aa21.69■■□□□ 1.06
PHGDH-234ENST00000642041 NPHP1O15259 732 aa21.68■■□□□ 1.06
PHGDH-234ENST00000642041 AOC2O75106 756 aa21.68■■□□□ 1.06
PHGDH-234ENST00000642041 STARD3NLO95772 234 aa21.68■■□□□ 1.06
PHGDH-234ENST00000642041 FMR1Q06787 632 aaKnown RBP eCLIP21.68■■□□□ 1.068e-7■■□□□ 12
PHGDH-234ENST00000642041 CST9Q5W186 159 aa21.68■■□□□ 1.06
PHGDH-234ENST00000642041 SETDB2Q96T68 719 aa21.68■■□□□ 1.06
PHGDH-234ENST00000642041 SIPA1L3O60292 1781 aaPredicted RBP21.68■■□□□ 1.06
PHGDH-234ENST00000642041 C20orf194Q5TEA3 1177 aa21.67■■□□□ 1.06
PHGDH-234ENST00000642041 PRPF38BQ5VTL8 546 aaKnown RBP21.67■■□□□ 1.06
PHGDH-234ENST00000642041 RWDD1Q9H446 243 aaPredicted RBP21.67■■□□□ 1.06
PHGDH-234ENST00000642041 TRPM7Q96QT4 1865 aa21.66■■□□□ 1.06
PHGDH-234ENST00000642041 TCERG1O14776 1098 aaKnown RBP21.66■■□□□ 1.06
PHGDH-234ENST00000642041 RTKN2Q8IZC4 609 aa21.66■■□□□ 1.06
PHGDH-234ENST00000642041 C8orf58Q8NAV2 365 aa21.66■■□□□ 1.06
PHGDH-234ENST00000642041 TBC1D2BQ9UPU7 963 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms