RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KIF16BQ96L93 1317 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CEP104O60308 925 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC73Q6ZRK6 1079 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 MPDZO75970 2070 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 FGFR1OPO95684 399 aaKnown RBP4.13□□□□□ -1.75
SCN1A-221ENST00000641996 GPATCH3Q96I76 525 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 CCSER2Q9H7U1 834 aa4.13□□□□□ -1.75
SCN1A-221ENST00000641996 PRC1O43663 620 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 PTPN14Q15678 1187 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 MKRN1Q9UHC7 482 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 PDZRN3Q9UPQ7 1066 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CD53P19397 219 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 KAZNQ674X7 775 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 FAAH2Q6GMR7 532 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TSC1Q92574 1164 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 UNC13AQ9UPW8 1703 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 FRAT2O75474 233 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 AKAP17AQ02040 695 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 NAIF1Q69YI7 327 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 MYO1HQ8N1T3 1032 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 GAS2L2Q8NHY3 880 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 STK31Q9BXU1 1019 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 MKS1Q9NXB0 559 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 COL4A3BPQ9Y5P4 624 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF638Q14966 1978 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ANKRD18BA2A2Z9 1011 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 POLR3GO15318 223 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TBC1D8O95759 1140 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ATF3P18847 181 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 BASP1P80723 227 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 SIL1Q9H173 461 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 NDC80O14777 642 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 HSPA1AP0DMV8 641 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 HSPA1BP0DMV9 641 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 XPCQ01831 940 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF280CQ8ND82 737 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM4Q9C037 500 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF711Q9Y462 761 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC194A0A1B0GVG4 234 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM64CA6NLI5 447 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 KIF5BP33176 963 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 NOP2P46087 812 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 BLVRAP53004 296 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TNIP1Q15025 636 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 POLR3EQ9NVU0 708 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TIPRLO75663 272 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 GKAP1Q5VSY0 366 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 DSTYKQ6XUX3 929 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CWC25Q9NXE8 425 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CDC37L1Q7L3B6 337 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF354CQ86Y25 554 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 DDX11Q96FC9 970 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 TNMDQ9H2S6 317 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 COG6Q9Y2V7 657 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 MYL3P08590 195 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 PDCD2Q16342 344 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 LONRF1Q17RB8 773 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 HNRNPUL2Q1KMD3 747 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 MCTP2Q6DN12 878 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 BRMS1Q9HCU9 246 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 PICK1Q9NRD5 415 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC39Q9UFE4 941 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 FAM177BA6PVY3 158 aa4.12□□□□□ -1.75
SCN1A-221ENST00000641996 CCSAPQ6IQ19 270 aaPredicted RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 RANBP17Q9H2T7 1088 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 DHX36Q9H2U1 1008 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 SNRNP200O75643 2136 aaKnown RBP4.12□□□□□ -1.75
SCN1A-221ENST00000641996 RNF187Q5TA31 235 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 FSD1Q9BTV5 496 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 KINO60870 393 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC15Q0P6D6 951 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 COBLL1Q53SF7 1204 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 ANKRD42Q8N9B4 389 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 PRELID1Q9Y255 219 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 NUCB1Q02818 461 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TSR2Q969E8 191 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 CENPTQ96BT3 561 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 DUSP9Q99956 384 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SH3GL3Q99963 347 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 JRKLQ9Y4A0 524 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TEX11Q8IYF3 940 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SATB2Q9UPW6 733 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 FAM50BQ9Y247 325 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 GRXCR2A6NFK2 248 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 XPOTO43592 962 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 PSMC4P43686 418 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 ZSCAN26Q16670 478 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SLFNL1Q499Z3 407 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 LARP1BQ659C4 914 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 LGR5O75473 907 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 IKQ13123 557 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 DSEQ9UL01 958 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 RELL1Q8IUW5 271 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 DDX27Q96GQ7 796 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 CLMNQ96JQ2 1002 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TTC14Q96N46 770 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 NAP1L3Q99457 506 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TBK1Q9UHD2 729 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SEPT6Q14141 434 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms