RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	ZNF219	Q9P2Y4	722 aa	Predicted RBP	19.4	■□□□□ 0.7
PHGDH-231	ENST00000641939	RASSF7	Q02833	373 aa		19.39	■□□□□ 0.69
PHGDH-231	ENST00000641939	CRY2	Q49AN0	593 aa		19.39	■□□□□ 0.69
PHGDH-231	ENST00000641939	RNF181	Q9P0P0	153 aa		19.39	■□□□□ 0.69
PHGDH-231	ENST00000641939	RNF123	Q5XPI4	1314 aa		19.39	■□□□□ 0.69
PHGDH-231	ENST00000641939	FANCI	Q9NVI1	1328 aa		19.39	■□□□□ 0.69
PHGDH-231	ENST00000641939	GOLGA2	Q08379	1002 aa		19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	TWISTNB	Q3B726	338 aa	Predicted RBP	19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	SOGA3	Q5TF21	947 aa		19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	ZNF526	Q8TF50	670 aa	Predicted RBP	19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	PHAX	Q9H814	394 aa	Known RBP	19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	GPBP1L1	Q9HC44	474 aa	Predicted RBP	19.38	■□□□□ 0.69
PHGDH-231	ENST00000641939	DICER1	Q9UPY3	1922 aa	Known RBP	19.37	■□□□□ 0.69
PHGDH-231	ENST00000641939	NFKBIE	O00221	500 aa		19.37	■□□□□ 0.69
PHGDH-231	ENST00000641939	ALDH1B1	P30837	517 aa		19.37	■□□□□ 0.69
PHGDH-231	ENST00000641939	LAMB2	P55268	1798 aa		19.37	■□□□□ 0.69
PHGDH-231	ENST00000641939	CCER2	I3L3R5	266 aa		19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	LMNB1	P20700	586 aa		19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	SLC10A5	Q5PT55	438 aa		19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	RIC3	Q7Z5B4	369 aa		19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	ISCA1	Q9BUE6	129 aa		19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	TRMT112	Q9UI30	125 aa	Known RBP	19.36	■□□□□ 0.69
PHGDH-231	ENST00000641939	C7orf43	Q8WVR3	580 aa		19.35	■□□□□ 0.69
PHGDH-231	ENST00000641939	RPGR	Q92834	1020 aa	Known RBP	19.35	■□□□□ 0.69
PHGDH-231	ENST00000641939	NLRP3	Q96P20	1036 aa		19.35	■□□□□ 0.69
PHGDH-231	ENST00000641939	STK31	Q9BXU1	1019 aa		19.35	■□□□□ 0.69
PHGDH-231	ENST00000641939	TIAM2	Q8IVF5	1701 aa		19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	SH3TC1	Q8TE82	1336 aa		19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	ATP5J2-PTCD1	G3V325	749 aa		19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	DDX58	O95786	925 aa	Known RBP	19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	HOXA10	P31260	410 aa	Predicted RBP	19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	MYH16	Q9H6N6	1097 aa		19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.34	■□□□□ 0.69
PHGDH-231	ENST00000641939	LTBP3	Q9NS15	1303 aa		19.33	■□□□□ 0.69
PHGDH-231	ENST00000641939	PRELP	P51888	382 aa		19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	TRIM28	Q13263	835 aa	Known RBP	19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	C3orf67	Q6ZVT6	689 aa		19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	RBM17	Q96I25	401 aa	Known RBP	19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	TAOK3	Q9H2K8	898 aa		19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	DDX60	Q8IY21	1712 aa	Known RBP	19.33	■□□□□ 0.68
PHGDH-231	ENST00000641939	ZC3H4	Q9UPT8	1303 aa	Known RBP	19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	TCERG1	O14776	1098 aa	Known RBP	19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	EXOSC9	Q06265	439 aa	Known RBP	19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	CCDC93	Q567U6	631 aa		19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	SYNE4	Q8N205	404 aa		19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	CRAMP1	Q96RY5	1269 aa		19.32	■□□□□ 0.68
PHGDH-231	ENST00000641939	ZNF521	Q96K83	1311 aa		19.31	■□□□□ 0.68
PHGDH-231	ENST00000641939	VAMP4	O75379	141 aa		19.31	■□□□□ 0.68
PHGDH-231	ENST00000641939	HCLS1	P14317	486 aa	Predicted RBP	19.31	■□□□□ 0.68
PHGDH-231	ENST00000641939	ZNF428	Q96B54	188 aa		19.31	■□□□□ 0.68
PHGDH-231	ENST00000641939	SLC4A2	P04920	1241 aa		19.3	■□□□□ 0.68
PHGDH-231	ENST00000641939	MYD88	Q99836	296 aa		19.3	■□□□□ 0.68
PHGDH-231	ENST00000641939	C1QTNF8	P60827	252 aa		19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	OLFM4	Q6UX06	510 aa		19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	KSR2	Q6VAB6	950 aa		19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	RTKN2	Q8IZC4	609 aa		19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	FAM89A	Q96GI7	184 aa		19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	METTL22	Q9BUU2	404 aa	Predicted RBP	19.29	■□□□□ 0.68
PHGDH-231	ENST00000641939	TAF1	P21675	1872 aa		19.28	■□□□□ 0.68
PHGDH-231	ENST00000641939	KDM2B	Q8NHM5	1336 aa		19.28	■□□□□ 0.68
PHGDH-231	ENST00000641939	CC2D2B	Q6DHV5	1058 aa		19.28	■□□□□ 0.68
PHGDH-231	ENST00000641939	CCDC191	Q8NCU4	936 aa		19.28	■□□□□ 0.68
PHGDH-231	ENST00000641939	MAP3K2	Q9Y2U5	619 aa		19.28	■□□□□ 0.68
PHGDH-231	ENST00000641939	PI4KAP2	A4QPH2	592 aa		19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	PPEF1	O14829	653 aa	Predicted RBP	19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	FKBP4	Q02790	459 aa	Known RBP eCLIP	19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	DIEXF	Q68CQ4	756 aa	Known RBP	19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	G2E3	Q7L622	706 aa		19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	PI4KAP1	Q8N8J0	262 aa		19.27	■□□□□ 0.68
PHGDH-231	ENST00000641939	KIF3C	O14782	793 aa		19.26	■□□□□ 0.67
PHGDH-231	ENST00000641939	FLII	Q13045	1269 aa		19.26	■□□□□ 0.67
PHGDH-231	ENST00000641939	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	19.26	■□□□□ 0.67
PHGDH-231	ENST00000641939	CWC25	Q9NXE8	425 aa	Predicted RBP	19.26	■□□□□ 0.67
PHGDH-231	ENST00000641939	ABCC4	O15439	1325 aa		19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	SNED1	Q8TER0	1413 aa		19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	NEXN	Q0ZGT2	675 aa		19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	GRIPAP1	Q4V328	841 aa		19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	RTL5	Q5HYW3	569 aa	Predicted RBP	19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	DDX46	Q7L014	1031 aa	Known RBP	19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	NMRK2	Q9NPI5	230 aa		19.25	■□□□□ 0.67
PHGDH-231	ENST00000641939	GLTPD2	A6NH11	291 aa		19.24	■□□□□ 0.67
PHGDH-231	ENST00000641939	IRS4	O14654	1257 aa	Predicted RBP	19.24	■□□□□ 0.67
PHGDH-231	ENST00000641939	BBOX1	O75936	387 aa		19.24	■□□□□ 0.67
PHGDH-231	ENST00000641939	PSMD1	Q99460	953 aa		19.24	■□□□□ 0.67
PHGDH-231	ENST00000641939	ZNF277	Q9NRM2	450 aa	Predicted RBP	19.24	■□□□□ 0.67
PHGDH-231	ENST00000641939		E9PSI1	815 aa		19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	PCCA	P05165	728 aa	Predicted RBP	19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	HSP90B1	P14625	803 aa	Known RBP	19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	FKBP5	Q13451	457 aa	Predicted RBP	19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	SF3B3	Q15393	1217 aa	Known RBP	19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	TMX4	Q9H1E5	349 aa	Predicted RBP	19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	ATP6V0A2	Q9Y487	856 aa		19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	MYH3	P11055	1940 aa		19.23	■□□□□ 0.67
PHGDH-231	ENST00000641939	IGKV5-2	P06315	115 aa		19.22	■□□□□ 0.67
PHGDH-231	ENST00000641939	GRAP	Q13588	217 aa		19.22	■□□□□ 0.67
PHGDH-231	ENST00000641939	DPY19L2	Q6NUT2	758 aa		19.22	■□□□□ 0.67
PHGDH-231	ENST00000641939	GRAPL	Q8TC17	118 aa	Predicted RBP	19.22	■□□□□ 0.67
PHGDH-231	ENST00000641939	IARS	P41252	1262 aa	Known RBP	19.21	■□□□□ 0.67
PHGDH-231	ENST00000641939	SLC51A	Q86UW1	340 aa		19.21	■□□□□ 0.67
PHGDH-231	ENST00000641939	RRAGC	Q9HB90	399 aa		19.21	■□□□□ 0.67

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms