RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CARD10Q9BWT7 1032 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 YTHDC2Q9H6S0 1430 aaKnown RBP5.87□□□□□ -1.47
SCN1A-218ENST00000640036 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.87□□□□□ -1.47
SCN1A-218ENST00000640036 SLC39A6Q13433 755 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 TANGO6Q9C0B7 1094 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 WDR66Q8TBY9 1149 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 GBP4Q96PP9 640 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 MBIPQ9NS73 344 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 NLRP1Q9C000 1473 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC85CA6NKD9 419 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 HSP90AA2PQ14568 343 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC191Q8NCU4 936 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 DNAAF4Q8WXU2 420 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 AP5M1Q9H0R1 490 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 MIS18AQ9NYP9 233 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 LOC102724428A0A0B4J2F2 783 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 ZBED4O75132 1171 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 SIK1P57059 783 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 STIM1Q13586 685 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 INTS3Q68E01 1043 aaKnown RBP5.87□□□□□ -1.47
SCN1A-218ENST00000640036 CIAPIN1Q6FI81 312 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 CDC37L1Q7L3B6 337 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 WASF1Q92558 559 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 NOC2LQ9Y3T9 749 aaKnown RBP5.87□□□□□ -1.47
SCN1A-218ENST00000640036 PRXQ9BXM0 1461 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 PIBF1Q8WXW3 757 aa5.87□□□□□ -1.47
SCN1A-218ENST00000640036 KIF28PB7ZC32 967 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 UQCRHP07919 91 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 TSPY3P0CV98 308 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 TSPY8P0CW00 308 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 RAB3GAP1Q15042 981 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 CATIPQ7Z7H3 387 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 PAGR1Q9BTK6 254 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 FLT4P35916 1363 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 GOLGA6L19H0YKK7 550 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 DPF3Q92784 378 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 KAT14Q9H8E8 782 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 PALM3A6NDB9 673 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-218ENST00000640036 BECN2A8MW95 431 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 KDM4AO75164 1064 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 U3KPZ7 1027 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-218ENST00000640036 MYO5CQ9NQX4 1742 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 ERVV-2B6SEH9 535 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 NLRP5P59047 1200 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 HSP90AB2PQ58FF8 381 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 TEX35Q5T0J7 233 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 COPS6Q7L5N1 327 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 EMILIN1Q9Y6C2 1016 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 RIMBP3CA6NJZ7 1639 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 RIMBP3BA6NNM3 1639 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 RIMBP3Q9UFD9 1639 aa5.86□□□□□ -1.47
SCN1A-218ENST00000640036 TMEM266Q2M3C6 531 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ACBD3Q9H3P7 528 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 PODXL2Q9NZ53 605 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 MAP3K2Q9Y2U5 619 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 LIG1P18858 919 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 PNMA8AQ86V59 439 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 JMYQ8N9B5 988 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 TEKT1Q969V4 418 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 CIZ1Q9ULV3 898 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC173Q0VFZ6 552 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 TRMT1LQ7Z2T5 733 aaKnown RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 CCDC112Q8NEF3 446 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 VAT1LQ9HCJ6 419 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 MAGEC2Q9UBF1 373 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ARAP1Q96P48 1450 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 UGGT2Q9NYU1 1516 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 CYP7A1P22680 504 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ATP2B4P23634 1241 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 KMT5BQ4FZB7 885 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 STXBP4Q6ZWJ1 553 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ABI1Q8IZP0 508 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 XAGE3Q8WTP9 111 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 SMC3Q9UQE7 1217 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 AK9Q5TCS8 1911 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 KIAA0556O60303 1618 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 SERPINB2P05120 415 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 LTKP29376 864 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 SREBF2Q12772 1141 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 ATP2B3Q16720 1220 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 RNF216Q9NWF9 866 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 KIF1BPQ96EK5 621 aa5.85□□□□□ -1.47
SCN1A-218ENST00000640036 TRIM6Q9C030 488 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-218ENST00000640036 BACH1O14867 736 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 HIBADHP31937 336 aaKnown RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 INCENPQ9NQS7 918 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 COG6Q9Y2V7 657 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 CT47B1P0C2W7 299 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 VEGFAP15692 232 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-218ENST00000640036 NPATQ14207 1427 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 TEX11Q8IYF3 940 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 TCHPQ9BT92 498 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 MTFR1LQ9H019 292 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 ATP7AQ04656 1500 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 NEFHP12036 1026 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 FOSBP53539 338 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 STK24Q9Y6E0 443 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 SPDYE3A6NKU9 549 aa5.84□□□□□ -1.47
SCN1A-218ENST00000640036 KCNQ2O43526 872 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms