RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NOVA2Q9UNW9 492 aaKnown RBP9.05□□□□□ -0.96
CD44-239ENST00000639002 ADARB2-AS1A8MUL3 147 aa9.04□□□□□ -0.96
CD44-239ENST00000639002 FAM69CQ0P6D2 419 aa9.04□□□□□ -0.96
CD44-239ENST00000639002 TNFRSF25Q93038 417 aa9.04□□□□□ -0.96
CD44-239ENST00000639002 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.03□□□□□ -0.96
CD44-239ENST00000639002 KLK14Q9P0G3 267 aa9.03□□□□□ -0.96
CD44-239ENST00000639002 STARD13Q9Y3M8 1113 aa9.03□□□□□ -0.96
CD44-239ENST00000639002 GNB5O14775 395 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 FOXO3O43524 673 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 IGHA1P01876 353 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 COL9A3Q14050 684 aaPredicted RBP9.02□□□□□ -0.97
CD44-239ENST00000639002 IER5Q5VY09 327 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 TRIM11Q96F44 468 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 GTF3C3Q9Y5Q9 886 aa9.02□□□□□ -0.97
CD44-239ENST00000639002 TGFBR3LH3BV60 316 aa9.01□□□□□ -0.97
CD44-239ENST00000639002 PROCP04070 461 aa9.01□□□□□ -0.97
CD44-239ENST00000639002 ELOAQ14241 798 aaKnown RBP9.01□□□□□ -0.97
CD44-239ENST00000639002 STK32AQ8WU08 396 aa9.01□□□□□ -0.97
CD44-239ENST00000639002 SPOCK3Q9BQ16 436 aa9.01□□□□□ -0.97
CD44-239ENST00000639002 LRFN2Q9ULH4 789 aa9.01□□□□□ -0.97
CD44-239ENST00000639002 FKBP5Q13451 457 aaPredicted RBP9□□□□□ -0.97
CD44-239ENST00000639002 HIF1AQ16665 826 aa9□□□□□ -0.97
CD44-239ENST00000639002 PRIMPOLQ96LW4 560 aa9□□□□□ -0.97
CD44-239ENST00000639002 GSX2Q9BZM3 304 aa9□□□□□ -0.97
CD44-239ENST00000639002 ACIN1Q9UKV3 1341 aaKnown RBP9□□□□□ -0.97
CD44-239ENST00000639002 INPP5BP32019 993 aa8.99□□□□□ -0.97
CD44-239ENST00000639002 DGKZQ13574 1117 aa8.99□□□□□ -0.97
CD44-239ENST00000639002 SUZ12Q15022 739 aaKnown RBP8.99□□□□□ -0.97
CD44-239ENST00000639002 OCLNQ16625 522 aa8.99□□□□□ -0.97
CD44-239ENST00000639002 BHMTQ93088 406 aa8.99□□□□□ -0.97
CD44-239ENST00000639002 MYO19Q96H55 970 aa8.99□□□□□ -0.97
CD44-239ENST00000639002 MSTNO14793 375 aa8.98□□□□□ -0.97
CD44-239ENST00000639002 ALAS2P22557 587 aa8.98□□□□□ -0.97
CD44-239ENST00000639002 C8orf86Q6ZUL3 223 aa8.98□□□□□ -0.97
CD44-239ENST00000639002 ALYREFQ86V81 257 aaKnown RBP8.98□□□□□ -0.97
CD44-239ENST00000639002 PRMT3O60678 531 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 ATG7O95352 703 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 ALBP02768 609 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 ADH7P40394 386 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 IDH3AP50213 366 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 SWI5Q1ZZU3 235 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 C11orf91Q3C1V1 193 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 C20orf204Q6ZNR8 217 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 MICALL1Q8N3F8 863 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 PLVAPQ9BX97 442 aa8.97□□□□□ -0.97
CD44-239ENST00000639002 ARID3CA6NKF2 412 aa8.96□□□□□ -0.98
CD44-239ENST00000639002 OPLAHO14841 1288 aa8.96□□□□□ -0.98
CD44-239ENST00000639002 M0R082 166 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 PIK3R2O00459 728 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 MICAL2O94851 1124 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 NEUROD1Q13562 356 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 COX20Q5RI15 118 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 TMEM164Q5U3C3 297 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 CAPN12Q6ZSI9 719 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 ZNF417Q8TAU3 575 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 ZNF587Q96SQ5 575 aaPredicted RBP8.95□□□□□ -0.98
CD44-239ENST00000639002 SLAIN2Q9P270 581 aa8.95□□□□□ -0.98
CD44-239ENST00000639002 C1QTNF9BB2RNN3 333 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 CCINQ13939 588 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 FAM26DQ5JW98 314 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 CD163Q86VB7 1156 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 VTI1AQ96AJ9 217 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 SAP130Q9H0E3 1048 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 PRDM6Q9NQX0 595 aa8.94□□□□□ -0.98
CD44-239ENST00000639002 NOP53Q9NZM5 478 aaKnown RBP8.94□□□□□ -0.98
CD44-239ENST00000639002 CHRNA4P43681 627 aa8.93□□□□□ -0.98
CD44-239ENST00000639002 IFT43Q96FT9 208 aa8.93□□□□□ -0.98
CD44-239ENST00000639002 EFCC1Q9HA90 598 aa8.93□□□□□ -0.98
CD44-239ENST00000639002 ZFATQ9P243 1243 aa8.93□□□□□ -0.98
CD44-239ENST00000639002 USP20Q9Y2K6 914 aa8.93□□□□□ -0.98
CD44-239ENST00000639002 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.93□□□□□ -0.98
CD44-239ENST00000639002 NID1P14543 1247 aa8.92□□□□□ -0.98
CD44-239ENST00000639002 NFKB1P19838 968 aa8.92□□□□□ -0.98
CD44-239ENST00000639002 UBE2OQ9C0C9 1292 aaKnown RBP8.92□□□□□ -0.98
CD44-239ENST00000639002 DNAJB12Q9NXW2 375 aaKnown RBP8.92□□□□□ -0.98
CD44-239ENST00000639002 SLC6A14Q9UN76 642 aa8.92□□□□□ -0.98
CD44-239ENST00000639002 TARSP26639 723 aaKnown RBP8.91□□□□□ -0.98
CD44-239ENST00000639002 ARSDP51689 593 aa8.91□□□□□ -0.98
CD44-239ENST00000639002 PBXIP1Q96AQ6 731 aa8.91□□□□□ -0.98
CD44-239ENST00000639002 IGFLR1Q9H665 355 aa8.91□□□□□ -0.98
CD44-239ENST00000639002 CXXC1Q9P0U4 656 aaPredicted RBP8.91□□□□□ -0.98
CD44-239ENST00000639002 SERPINA10Q9UK55 444 aa8.91□□□□□ -0.98
CD44-239ENST00000639002 ZBTB42B2RXF5 422 aa8.9□□□□□ -0.98
CD44-239ENST00000639002 TBC1D8BQ0IIM8 1120 aa8.9□□□□□ -0.98
CD44-239ENST00000639002 TREML1Q86YW5 311 aa8.9□□□□□ -0.98
CD44-239ENST00000639002 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.9□□□□□ -0.985e-38■■■■■ 698.7
CD44-239ENST00000639002 NAGPAQ9UK23 515 aa8.9□□□□□ -0.98
CD44-239ENST00000639002 LOC100996750A0A140TA64 210 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 ILDR2Q71H61 639 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 KRT25Q7Z3Z0 450 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 ETFBKMTQ8IXQ9 262 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 CLP1Q92989 425 aaKnown RBP8.89□□□□□ -0.99
CD44-239ENST00000639002 COL26A1Q96A83 441 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 CCDC97Q96F63 343 aaPredicted RBP8.89□□□□□ -0.99
CD44-239ENST00000639002 PNMA5Q96PV4 448 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 KRTAP4-6Q9BYQ5 205 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 C1orf115Q9H7X2 142 aa8.89□□□□□ -0.99
CD44-239ENST00000639002 RTCBQ9Y3I0 505 aaKnown RBP8.89□□□□□ -0.99
CD44-239ENST00000639002 FAM229AH3BQW9 127 aa8.88□□□□□ -0.99
CD44-239ENST00000639002 TNFRSF10BO14763 440 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms