RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
CLN3-261ENST00000637686 PDZRN3Q9UPQ7 1066 aa12.62□□□□□ -0.39
CLN3-261ENST00000637686 ANKRD36CQ5JPF3 1778 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 PI4KAP2A4QPH2 592 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 SRGNP10124 158 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 FLIIQ13045 1269 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 KSR2Q6VAB6 950 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 TTLL6Q8N841 843 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 PI4KAP1Q8N8J0 262 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 MYD88Q99836 296 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 MAP3K2Q9Y2U5 619 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 ARFGEF2Q9Y6D5 1785 aa12.61□□□□□ -0.39
CLN3-261ENST00000637686 KLRG2A4D1S0 409 aaPredicted RBP12.6□□□□□ -0.39
CLN3-261ENST00000637686 SYNE4Q8N205 404 aa12.6□□□□□ -0.39
CLN3-261ENST00000637686 MASTLQ96GX5 879 aa12.6□□□□□ -0.39
CLN3-261ENST00000637686 METTL22Q9BUU2 404 aaPredicted RBP12.6□□□□□ -0.39
CLN3-261ENST00000637686 TRMT112Q9UI30 125 aaKnown RBP12.6□□□□□ -0.39
CLN3-261ENST00000637686 ADCY9O60503 1353 aa12.59□□□□□ -0.39
CLN3-261ENST00000637686 DLEC1Q9Y238 1755 aa12.59□□□□□ -0.39
CLN3-261ENST00000637686 TRIM28Q13263 835 aaKnown RBP12.59□□□□□ -0.39
CLN3-261ENST00000637686 FKBP5Q13451 457 aaPredicted RBP12.59□□□□□ -0.39
CLN3-261ENST00000637686 STYK1Q6J9G0 422 aa12.59□□□□□ -0.39
CLN3-261ENST00000637686 ARHGAP27Q6ZUM4 889 aa12.59□□□□□ -0.39
CLN3-261ENST00000637686 COL11A2P13942 1736 aaPredicted RBP12.59□□□□□ -0.39
CLN3-261ENST00000637686 TNRC6CQ9HCJ0 1690 aaKnown RBP12.58□□□□□ -0.4
CLN3-261ENST00000637686 CACNA1FO60840 1977 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 HCLS1P14317 486 aaPredicted RBP12.58□□□□□ -0.4
CLN3-261ENST00000637686 NPR1P16066 1061 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 SLC10A5Q5PT55 438 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 FAM89AQ96GI7 184 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 RNF123Q5XPI4 1314 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 SH3TC1Q8TE82 1336 aa12.58□□□□□ -0.4
CLN3-261ENST00000637686 YY1P25490 414 aa12.57□□□□□ -0.4
CLN3-261ENST00000637686 CRY2Q49AN0 593 aa12.57□□□□□ -0.4
CLN3-261ENST00000637686 RTL5Q5HYW3 569 aaPredicted RBP12.57□□□□□ -0.4
CLN3-261ENST00000637686 C3orf67Q6ZVT6 689 aa12.57□□□□□ -0.4
CLN3-261ENST00000637686 CCDC191Q8NCU4 936 aa12.57□□□□□ -0.4
CLN3-261ENST00000637686 NLRP3Q96P20 1036 aa12.57□□□□□ -0.4
CLN3-261ENST00000637686 RIC1Q4ADV7 1423 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 ARFGEF1Q9Y6D6 1849 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 F6X3S4 739 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 C21orf2O43822 256 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 IGKV5-2P06315 115 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 NEXNQ0ZGT2 675 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 PRPF40BQ6NWY9 871 aaKnown RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 MRPL50Q8N5N7 158 aaKnown RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 ZBTB38Q8NAP3 1195 aaPredicted RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 DNAAF4Q8WXU2 420 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 SSH1Q8WYL5 1049 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 JARID2Q92833 1246 aaPredicted RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 RPGRQ92834 1020 aaKnown RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 CWC25Q9NXE8 425 aaPredicted RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 ZNF219Q9P2Y4 722 aaPredicted RBP12.56□□□□□ -0.4
CLN3-261ENST00000637686 CHD4Q14839 1912 aa12.56□□□□□ -0.4
CLN3-261ENST00000637686 ALDH1B1P30837 517 aa12.55□□□□□ -0.4
CLN3-261ENST00000637686 CWF19L2Q2TBE0 894 aaKnown RBP12.55□□□□□ -0.4
CLN3-261ENST00000637686 BCL2L13Q9BXK5 485 aa12.55□□□□□ -0.4
CLN3-261ENST00000637686 SLX4Q8IY92 1834 aa12.55□□□□□ -0.4
CLN3-261ENST00000637686 NEURL1BA8MQ27 555 aa12.54□□□□□ -0.4
CLN3-261ENST00000637686 IRS4O14654 1257 aaPredicted RBP12.54□□□□□ -0.4
CLN3-261ENST00000637686 PCCAP05165 728 aaPredicted RBP12.54□□□□□ -0.4
CLN3-261ENST00000637686 HOXA10P31260 410 aaPredicted RBP12.54□□□□□ -0.4
CLN3-261ENST00000637686 RBM17Q96I25 401 aaKnown RBP12.54□□□□□ -0.4
CLN3-261ENST00000637686 CACNA1SQ13698 1873 aa12.54□□□□□ -0.4
CLN3-261ENST00000637686 ALDH1L2Q3SY69 923 aa12.53□□□□□ -0.4
CLN3-261ENST00000637686 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
CLN3-261ENST00000637686 CRAMP1Q96RY5 1269 aa12.53□□□□□ -0.4
CLN3-261ENST00000637686 SMC4Q9NTJ3 1288 aa12.53□□□□□ -0.4
CLN3-261ENST00000637686 DDX60Q8IY21 1712 aaKnown RBP12.52□□□□□ -0.41
CLN3-261ENST00000637686 RASSF7Q02833 373 aa12.52□□□□□ -0.41
CLN3-261ENST00000637686 BEND3Q5T5X7 828 aa12.52□□□□□ -0.41
CLN3-261ENST00000637686 OLFM4Q6UX06 510 aa12.52□□□□□ -0.41
CLN3-261ENST00000637686 LINS1Q8NG48 757 aa12.52□□□□□ -0.41
CLN3-261ENST00000637686 LAMB2P55268 1798 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 H7C1W4 665 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 RARSP54136 660 aaKnown RBP12.51□□□□□ -0.41
CLN3-261ENST00000637686 GCKRQ14397 625 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 SF3B3Q15393 1217 aaKnown RBP12.51□□□□□ -0.41
CLN3-261ENST00000637686 SLC4A10Q6U841 1118 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 DDX46Q7L014 1031 aaKnown RBP12.51□□□□□ -0.41
CLN3-261ENST00000637686 RCAN3Q9UKA8 241 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 ABCC4O15439 1325 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 PTPRCP08575 1304 aa12.51□□□□□ -0.41
CLN3-261ENST00000637686 NFKBIEO00221 500 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 PDE8AO60658 829 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 HSP90B1P14625 803 aaKnown RBP12.5□□□□□ -0.41
CLN3-261ENST00000637686 PRELPP51888 382 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 BRPF1P55201 1214 aaPredicted RBP12.5□□□□□ -0.41
CLN3-261ENST00000637686 CCDC93Q567U6 631 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 SOGA3Q5TF21 947 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 C9orf131Q5VYM1 1079 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 UBE3BQ7Z3V4 1068 aa12.5□□□□□ -0.41
CLN3-261ENST00000637686 CDHR2Q9BYE9 1310 aa12.49□□□□□ -0.41
CLN3-261ENST00000637686 PPEF1O14829 653 aaPredicted RBP12.49□□□□□ -0.41
CLN3-261ENST00000637686 GRAPQ13588 217 aa12.49□□□□□ -0.41
CLN3-261ENST00000637686 SLC51AQ86UW1 340 aa12.49□□□□□ -0.41
CLN3-261ENST00000637686 GRAPLQ8TC17 118 aaPredicted RBP12.49□□□□□ -0.41
CLN3-261ENST00000637686 CCDC85AQ96PX6 553 aaPredicted RBP12.49□□□□□ -0.41
CLN3-261ENST00000637686 TAOK3Q9H2K8 898 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms