RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SLC4A2P04920 1241 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 HSP90B1P14625 803 aaKnown RBP23.4■■□□□ 1.34
CLN3-259ENST00000637551 CRY2Q49AN0 593 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 SLC10A5Q5PT55 438 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 STYK1Q6J9G0 422 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 KSR2Q6VAB6 950 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 RIC3Q7Z5B4 369 aa23.4■■□□□ 1.34
CLN3-259ENST00000637551 UTP14AQ9BVJ6 771 aaKnown RBP23.4■■□□□ 1.34
CLN3-259ENST00000637551 PHAXQ9H814 394 aaKnown RBP23.4■■□□□ 1.34
CLN3-259ENST00000637551 ZBED9Q6R2W3 1325 aa23.39■■□□□ 1.34
CLN3-259ENST00000637551 GTF2E1P29083 439 aaPredicted RBP23.39■■□□□ 1.33
CLN3-259ENST00000637551 DALRD3Q5D0E6 543 aaKnown RBP23.39■■□□□ 1.33
CLN3-259ENST00000637551 SRGNP10124 158 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 GPTP24298 496 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 FLIIQ13045 1269 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 SUSD4Q5VX71 490 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 C2CD5Q86YS7 1000 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 CCDC191Q8NCU4 936 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 MASTLQ96GX5 879 aa23.38■■□□□ 1.33
CLN3-259ENST00000637551 METTL22Q9BUU2 404 aaPredicted RBP23.38■■□□□ 1.33
CLN3-259ENST00000637551 NPR1P16066 1061 aa23.37■■□□□ 1.33
CLN3-259ENST00000637551 ALDH1L2Q3SY69 923 aa23.37■■□□□ 1.33
CLN3-259ENST00000637551 TTLL6Q8N841 843 aa23.37■■□□□ 1.33
CLN3-259ENST00000637551 CNKSR1Q969H4 720 aa23.37■■□□□ 1.33
CLN3-259ENST00000637551 SH3TC1Q8TE82 1336 aa23.36■■□□□ 1.33
CLN3-259ENST00000637551 TNRC6CQ9HCJ0 1690 aaKnown RBP23.36■■□□□ 1.33
CLN3-259ENST00000637551 NEXNQ0ZGT2 675 aa23.36■■□□□ 1.33
CLN3-259ENST00000637551 ABCC12Q96J65 1359 aa23.36■■□□□ 1.33
CLN3-259ENST00000637551 TOMM70O94826 608 aa23.35■■□□□ 1.33
CLN3-259ENST00000637551 CHRNA5P30532 468 aa23.35■■□□□ 1.33
CLN3-259ENST00000637551 HNRNPUQ00839 825 aaKnown RBP eCLIP23.35■■□□□ 1.33
CLN3-259ENST00000637551 PI4KAP2A4QPH2 592 aa23.34■■□□□ 1.33
CLN3-259ENST00000637551 BRPF1P55201 1214 aaPredicted RBP23.34■■□□□ 1.33
CLN3-259ENST00000637551 SOGA3Q5TF21 947 aa23.34■■□□□ 1.33
CLN3-259ENST00000637551 PI4KAP1Q8N8J0 262 aa23.34■■□□□ 1.33
CLN3-259ENST00000637551 WWC3Q9ULE0 1092 aa23.34■■□□□ 1.33
CLN3-259ENST00000637551 ALDH1B1P30837 517 aa23.33■■□□□ 1.33
CLN3-259ENST00000637551 HOXA10P31260 410 aaPredicted RBP23.33■■□□□ 1.33
CLN3-259ENST00000637551 TRMT112Q9UI30 125 aaKnown RBP23.33■■□□□ 1.33
CLN3-259ENST00000637551 BCS1LQ9Y276 419 aa23.33■■□□□ 1.33
CLN3-259ENST00000637551 MAP3K2Q9Y2U5 619 aa23.33■■□□□ 1.33
CLN3-259ENST00000637551 DDX60Q8IY21 1712 aaKnown RBP23.33■■□□□ 1.32
CLN3-259ENST00000637551 PTPRCP08575 1304 aa23.33■■□□□ 1.32
CLN3-259ENST00000637551 FKBP5Q13451 457 aaPredicted RBP23.32■■□□□ 1.32
CLN3-259ENST00000637551 ERFEQ4G0M1 354 aa23.32■■□□□ 1.32
CLN3-259ENST00000637551 CDCA7LQ96GN5 454 aa23.32■■□□□ 1.32
CLN3-259ENST00000637551 NLRP3Q96P20 1036 aa23.32■■□□□ 1.32
CLN3-259ENST00000637551 COL13A1Q5TAT6 717 aaPredicted RBP23.31■■□□□ 1.32
CLN3-259ENST00000637551 ZBTB38Q8NAP3 1195 aaPredicted RBP23.31■■□□□ 1.32
CLN3-259ENST00000637551 DNAAF4Q8WXU2 420 aa23.31■■□□□ 1.32
CLN3-259ENST00000637551 CWC25Q9NXE8 425 aaPredicted RBP23.31■■□□□ 1.32
CLN3-259ENST00000637551 PCCAP05165 728 aaPredicted RBP23.3■■□□□ 1.32
CLN3-259ENST00000637551 GRIPAP1Q4V328 841 aa23.3■■□□□ 1.32
CLN3-259ENST00000637551 NUTM1Q86Y26 1132 aa23.3■■□□□ 1.32
CLN3-259ENST00000637551 LINS1Q8NG48 757 aa23.3■■□□□ 1.32
CLN3-259ENST00000637551 FER1L6Q2WGJ9 1857 aa23.3■■□□□ 1.32
CLN3-259ENST00000637551 CDHR2Q9BYE9 1310 aa23.3■■□□□ 1.32
CLN3-259ENST00000637551 G2E3Q7L622 706 aa23.29■■□□□ 1.32
CLN3-259ENST00000637551 CRAMP1Q96RY5 1269 aa23.29■■□□□ 1.32
CLN3-259ENST00000637551 MYH3P11055 1940 aa23.29■■□□□ 1.32
CLN3-259ENST00000637551 SLX4Q8IY92 1834 aa23.29■■□□□ 1.32
CLN3-259ENST00000637551 FAM177BA6PVY3 158 aa23.28■■□□□ 1.32
CLN3-259ENST00000637551 MYD88Q99836 296 aa23.28■■□□□ 1.32
CLN3-259ENST00000637551 LTBP3Q9NS15 1303 aa23.28■■□□□ 1.32
CLN3-259ENST00000637551 CACNA1SQ13698 1873 aa23.28■■□□□ 1.32
CLN3-259ENST00000637551 ATP5J2-PTCD1G3V325 749 aa23.27■■□□□ 1.32
CLN3-259ENST00000637551 CC2D2BQ6DHV5 1058 aa23.27■■□□□ 1.32
CLN3-259ENST00000637551 RPGRQ92834 1020 aaKnown RBP23.27■■□□□ 1.32
CLN3-259ENST00000637551 ZNF622Q969S3 477 aaKnown RBP eCLIP23.27■■□□□ 1.32
CLN3-259ENST00000637551 WDR90Q96KV7 1748 aa23.26■■□□□ 1.31
CLN3-259ENST00000637551 NEURL1BA8MQ27 555 aa23.26■■□□□ 1.31
CLN3-259ENST00000637551 SF3B3Q15393 1217 aaKnown RBP23.26■■□□□ 1.31
CLN3-259ENST00000637551 PRPF40BQ6NWY9 871 aaKnown RBP23.26■■□□□ 1.31
CLN3-259ENST00000637551 TMC4Q7Z404 712 aa23.26■■□□□ 1.31
CLN3-259ENST00000637551 MRPL50Q8N5N7 158 aaKnown RBP23.26■■□□□ 1.31
CLN3-259ENST00000637551 JMYQ8N9B5 988 aa23.26■■□□□ 1.31
CLN3-259ENST00000637551 RBM17Q96I25 401 aaKnown RBP23.26■■□□□ 1.31
CLN3-259ENST00000637551 ZC3H4Q9UPT8 1303 aaKnown RBP23.26■■□□□ 1.31
CLN3-259ENST00000637551 SBF1O95248 1867 aa23.26■■□□□ 1.31
CLN3-259ENST00000637551 IGKV5-2P06315 115 aa23.25■■□□□ 1.31
CLN3-259ENST00000637551 CCDC24Q8N4L8 307 aa23.25■■□□□ 1.31
CLN3-259ENST00000637551 SSH1Q8WYL5 1049 aa23.25■■□□□ 1.31
CLN3-259ENST00000637551 TCERG1O14776 1098 aaKnown RBP23.24■■□□□ 1.31
CLN3-259ENST00000637551 C7orf43Q8WVR3 580 aa23.24■■□□□ 1.31
CLN3-259ENST00000637551 KLRG1Q96E93 195 aa23.24■■□□□ 1.31
CLN3-259ENST00000637551 KIF16BQ96L93 1317 aa23.24■■□□□ 1.31
CLN3-259ENST00000637551 CAPN15O75808 1086 aa23.23■■□□□ 1.31
CLN3-259ENST00000637551 ALDH1L1O75891 902 aa23.23■■□□□ 1.31
CLN3-259ENST00000637551 NMRK2Q9NPI5 230 aa23.23■■□□□ 1.31
CLN3-259ENST00000637551 PCNTO95613 3336 aa23.22■■□□□ 1.31
CLN3-259ENST00000637551 IRS4O14654 1257 aaPredicted RBP23.22■■□□□ 1.31
CLN3-259ENST00000637551 GCKRQ14397 625 aa23.22■■□□□ 1.31
CLN3-259ENST00000637551 FAM89AQ96GI7 184 aa23.22■■□□□ 1.31
CLN3-259ENST00000637551 DICER1Q9UPY3 1922 aaKnown RBP23.21■■□□□ 1.31
CLN3-259ENST00000637551 PRELPP51888 382 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 BEND3Q5T5X7 828 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 RBM46Q8TBY0 533 aaKnown RBP23.21■■□□□ 1.31
CLN3-259ENST00000637551 ARHGAP45Q92619 1136 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 PLA2G12BQ9BX93 195 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 SMC4Q9NTJ3 1288 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms