RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HIF1AQ16665 826 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 RSPO4Q2I0M5 234 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-208ENST00000625916 BTLAQ7Z6A9 289 aa6.88□□□□□ -1.31
SCN1A-208ENST00000625916 SCG3Q8WXD2 468 aaKnown RBP6.88□□□□□ -1.31
SCN1A-208ENST00000625916 C21orf2O43822 256 aa6.87□□□□□ -1.31
SCN1A-208ENST00000625916 C20orf204Q6ZNR8 217 aa6.87□□□□□ -1.31
SCN1A-208ENST00000625916 SEC13P55735 322 aa6.86□□□□□ -1.31
SCN1A-208ENST00000625916 GAS2L2Q8NHY3 880 aa6.86□□□□□ -1.31
SCN1A-208ENST00000625916 PNMA5Q96PV4 448 aa6.86□□□□□ -1.31
SCN1A-208ENST00000625916 C2orf49Q9BVC5 232 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-208ENST00000625916 JPH1Q9HDC5 661 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-208ENST00000625916 SCO2A0A1W2PP80 73 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 NKAPLQ5M9Q1 402 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 LARP1Q6PKG0 1096 aaKnown RBP6.85□□□□□ -1.31
SCN1A-208ENST00000625916 STAG2Q8N3U4 1231 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 NUDT8Q8WV74 236 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 HINFPQ9BQA5 517 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 TFIP11Q9UBB9 837 aaKnown RBP6.85□□□□□ -1.31
SCN1A-208ENST00000625916 SLC6A14Q9UN76 642 aa6.85□□□□□ -1.31
SCN1A-208ENST00000625916 C9orf172C9J069 976 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 DYRK3O43781 588 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 DKK1O94907 266 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 RAC1P63000 192 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 GLMNQ92990 594 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 EFCC1Q9HA90 598 aa6.84□□□□□ -1.31
SCN1A-208ENST00000625916 A0A0A0MRY4 1105 aa6.83□□□□□ -1.32
SCN1A-208ENST00000625916 DNAJB12Q9NXW2 375 aaKnown RBP6.83□□□□□ -1.32
SCN1A-208ENST00000625916 MAFBQ9Y5Q3 323 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-208ENST00000625916 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-208ENST00000625916 LGR5O75473 907 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 ELNP15502 786 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 NFKB1P19838 968 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 CCINQ13939 588 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 RTN1Q16799 776 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 IER5Q5VY09 327 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 PSAPL1Q6NUJ1 521 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 CLUAP1Q96AJ1 413 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 GSX2Q9BZM3 304 aa6.82□□□□□ -1.32
SCN1A-208ENST00000625916 TGFBR3LH3BV60 316 aa6.81□□□□□ -1.32
SCN1A-208ENST00000625916 RGS9O75916 674 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-208ENST00000625916 SELPP16109 830 aa6.81□□□□□ -1.32
SCN1A-208ENST00000625916 EPB42P16452 691 aa6.81□□□□□ -1.32
SCN1A-208ENST00000625916 MBTPS1Q14703 1052 aa6.81□□□□□ -1.32
SCN1A-208ENST00000625916 PROSER2Q86WR7 435 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-208ENST00000625916 AFF1P51825 1210 aaKnown RBP6.8□□□□□ -1.32
SCN1A-208ENST00000625916 NRG1Q02297 640 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-208ENST00000625916 DPYDQ12882 1025 aa6.8□□□□□ -1.32
SCN1A-208ENST00000625916 ADGRE1Q14246 886 aa6.8□□□□□ -1.32
SCN1A-208ENST00000625916 CRTC2Q53ET0 693 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-208ENST00000625916 PRSS36Q5K4E3 855 aa6.8□□□□□ -1.32
SCN1A-208ENST00000625916 TXNRD3Q86VQ6 643 aa6.8□□□□□ -1.32
SCN1A-208ENST00000625916 DMRTC2Q8IXT2 367 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-208ENST00000625916 USP21Q9UK80 565 aa6.8□□□□□ -1.32
SCN1A-208ENST00000625916 IGFBP4P22692 258 aa6.79□□□□□ -1.32
SCN1A-208ENST00000625916 PCSK7Q16549 785 aa6.79□□□□□ -1.32
SCN1A-208ENST00000625916 FOXD4L6Q3SYB3 417 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-208ENST00000625916 SHISA2Q6UWI4 295 aa6.79□□□□□ -1.32
SCN1A-208ENST00000625916 FOXD4L3Q6VB84 417 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-208ENST00000625916 FAM35AQ86V20 835 aa6.79□□□□□ -1.32
SCN1A-208ENST00000625916 LENG1Q96BZ8 264 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-208ENST00000625916 CALR3Q96L12 384 aaKnown RBP6.79□□□□□ -1.32
SCN1A-208ENST00000625916 NAGPAQ9UK23 515 aa6.79□□□□□ -1.32
SCN1A-208ENST00000625916 CPB1P15086 417 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 IDH3AP50213 366 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 PTK7Q13308 1070 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 KRT25Q7Z3Z0 450 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 KLK14Q9P0G3 267 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 BCS1LQ9Y276 419 aa6.78□□□□□ -1.32
SCN1A-208ENST00000625916 USP17L15C9J2P7 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L10C9JJH3 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L13C9JLJ4 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L12C9JPN9 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L11C9JVI0 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L21D6R901 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L18D6R9N7 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L22D6RA61 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L17D6RBQ6 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L19D6RCP7 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L20D6RJB6 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 H2AFB1P0C5Y9 115 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 H2AFB2P0C5Z0 115 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 USP17L24Q0WX57 530 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 ANKMY2Q8IV38 441 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 FMR1NBQ8N0W7 255 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-208ENST00000625916 FNBP4Q8N3X1 1017 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-208ENST00000625916 TP53INP1Q96A56 240 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 VTI1AQ96AJ9 217 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 PSMG3-AS1Q96PY0 264 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 PPP1R12CQ9BZL4 782 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 VRTNQ9H8Y1 702 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 ZFP64Q9NPA5 681 aa6.77□□□□□ -1.33
SCN1A-208ENST00000625916 DMGDHQ9UI17 866 aaKnown RBP6.77□□□□□ -1.33
SCN1A-208ENST00000625916 LMOD1P29536 600 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-208ENST00000625916 DGKZQ13574 1117 aa6.76□□□□□ -1.33
SCN1A-208ENST00000625916 KANK4Q5T7N3 995 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-208ENST00000625916 MSL1Q68DK7 614 aa6.76□□□□□ -1.33
SCN1A-208ENST00000625916 KRTAP4-8Q9BYQ9 185 aa6.76□□□□□ -1.33
SCN1A-208ENST00000625916 FAM196BA6NMK8 535 aa6.75□□□□□ -1.33
SCN1A-208ENST00000625916 MAP3K6O95382 1288 aa6.75□□□□□ -1.33
SCN1A-208ENST00000625916 RARAP10276 462 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms