RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 TTLL7Q6ZT98 887 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 NUP133Q8WUM0 1156 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 CEBPZQ03701 1054 aaKnown RBP12.89□□□□□ -0.35
FAM3A-221ENST00000612856 TRAPPC3LQ5T215 181 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 SASS6Q6UVJ0 657 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 CWC22Q9HCG8 908 aaKnown RBP12.89□□□□□ -0.35
FAM3A-221ENST00000612856 CCDC39Q9UFE4 941 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 MAP3K5Q99683 1374 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 NLRP1Q9C000 1473 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 KCNQ2O43526 872 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 CDC45O75419 566 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 SMAP1Q8IYB5 467 aaPredicted RBP12.88□□□□□ -0.35
FAM3A-221ENST00000612856 SEPT12Q8IYM1 358 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 SBNO1A3KN83 1393 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 TIMM10P62072 90 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 ATP7BP35670 1465 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 MYO3AQ8NEV4 1616 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 ERICH2A1L162 156 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 DYNC1I1O14576 645 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 RPAP2Q8IXW5 612 aaPredicted RBP12.88□□□□□ -0.35
FAM3A-221ENST00000612856 TCEANC2Q96MN5 208 aa12.88□□□□□ -0.35
FAM3A-221ENST00000612856 NEURL4Q96JN8 1562 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 AGLP35573 1532 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 GRM8O00222 908 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 PROSER3Q2NL68 480 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 CERKQ8TCT0 537 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 ZNF592Q92610 1267 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 SLC52A2Q9HAB3 445 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 USP6P35125 1406 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 IRS4O14654 1257 aaPredicted RBP12.87□□□□□ -0.35
FAM3A-221ENST00000612856 ZBTB7BO15156 539 aaPredicted RBP12.87□□□□□ -0.35
FAM3A-221ENST00000612856 RNF20Q5VTR2 975 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 KSR2Q6VAB6 950 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 SMARCC1Q92922 1105 aaPredicted RBP12.87□□□□□ -0.35
FAM3A-221ENST00000612856 TEX13AQ9BXU3 409 aaPredicted RBP12.87□□□□□ -0.35
FAM3A-221ENST00000612856 LRRC7Q96NW7 1537 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 ERICH4A6NGS2 130 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 RXRBP28702 533 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 CAVIN4Q5BKX8 364 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 OTUD7AQ8TE49 926 aaPredicted RBP12.87□□□□□ -0.35
FAM3A-221ENST00000612856 GCC1Q96CN9 775 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 KIF1BPQ96EK5 621 aa12.87□□□□□ -0.35
FAM3A-221ENST00000612856 TAF5LO75529 589 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 NBPF7P0C2Y1 421 aaPredicted RBP12.86□□□□□ -0.35
FAM3A-221ENST00000612856 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
FAM3A-221ENST00000612856 AFF2P51816 1311 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 CPSF1Q10570 1443 aaKnown RBP12.86□□□□□ -0.35
FAM3A-221ENST00000612856 FAM135BQ49AJ0 1406 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 PHKG2P15735 406 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 TRMT1LQ7Z2T5 733 aaKnown RBP12.86□□□□□ -0.35
FAM3A-221ENST00000612856 ERC1Q8IUD2 1116 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 ARHGEF10O15013 1369 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 MPHOSPH10O00566 681 aaKnown RBP12.86□□□□□ -0.35
FAM3A-221ENST00000612856 MX1P20591 662 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 PRDM4Q9UKN5 801 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 SPATA31D1Q6ZQQ2 1576 aa12.86□□□□□ -0.35
FAM3A-221ENST00000612856 PNPLA6Q8IY17 1366 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 PDIA4P13667 645 aaKnown RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 TTLL12Q14166 644 aaPredicted RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 DZIP1Q86YF9 867 aaKnown RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 PDCL2Q8N4E4 241 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 AIDAQ96BJ3 306 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 TRPC5Q9UL62 973 aaPredicted RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 K7ELQ4 463 aaPredicted RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 TPTE2Q6XPS3 522 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 C17orf53Q8N3J3 647 aaPredicted RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 NBPF14Q5TI25 921 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 CPLX2Q6PUV4 134 aaKnown RBP12.85□□□□□ -0.35
FAM3A-221ENST00000612856 ERBB3P21860 1342 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 IQSEC2Q5JU85 1478 aa12.85□□□□□ -0.35
FAM3A-221ENST00000612856 CCDC94Q9BW85 323 aaPredicted RBP12.84□□□□□ -0.35
FAM3A-221ENST00000612856 ZBTB1Q9Y2K1 713 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 KIF3AQ9Y496 699 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 ADGRL3Q9HAR2 1447 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 CHL1O00533 1208 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 BAG4O95429 457 aaKnown RBP12.84□□□□□ -0.35
FAM3A-221ENST00000612856 FAM196AQ6ZSG2 479 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 SPC24Q8NBT2 197 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 RBSNQ9H1K0 784 aa12.84□□□□□ -0.35
FAM3A-221ENST00000612856 WDR78Q5VTH9 848 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 DDX21Q9NR30 783 aaKnown RBP eCLIP12.83□□□□□ -0.36
FAM3A-221ENST00000612856 CHMP4BP1P59074 171 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 ZSCAN23Q3MJ62 389 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 CCAR1Q8IX12 1150 aaKnown RBP12.83□□□□□ -0.36
FAM3A-221ENST00000612856 PIK3R4Q99570 1358 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 USP5P45974 858 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 ANKRD18AQ8IVF6 992 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 DDX11Q96FC9 970 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 STK32BQ9NY57 414 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 ZKSCAN5Q9Y2L8 839 aa12.83□□□□□ -0.36
FAM3A-221ENST00000612856 MAP2P11137 1827 aaKnown RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 LOC102724428A0A0B4J2F2 783 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 PES1O00541 588 aaKnown RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 SIK1P57059 783 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 HDAC1Q13547 482 aaPredicted RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 UTP14AQ9BVJ6 771 aaKnown RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 BICC1Q9H694 974 aaKnown RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 PARP3Q9Y6F1 533 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 SPATA31A3Q5VYP0 1347 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 IBSPP21815 317 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 820.3 ms