RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 TTC6Q86TZ1 520 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 DIP2BQ9P265 1576 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 GIGYF1O75420 1035 aaPredicted RBP16.76■□□□□ 0.27
COL6A1-207ENST00000612273 A0A087WWV3 80 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 GRM8O00222 908 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 RNMTO43148 476 aaKnown RBP16.76■□□□□ 0.27
COL6A1-207ENST00000612273 JAK2O60674 1132 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 BLOC1S2Q6QNY1 142 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 KSR2Q6VAB6 950 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 MYD88Q99836 296 aa16.76■□□□□ 0.27
COL6A1-207ENST00000612273 NRKQ7Z2Y5 1582 aa16.75■□□□□ 0.27
COL6A1-207ENST00000612273 LARP1Q6PKG0 1096 aaKnown RBP16.75■□□□□ 0.27
COL6A1-207ENST00000612273 AOX1Q06278 1338 aa16.75■□□□□ 0.27
COL6A1-207ENST00000612273 SASS6Q6UVJ0 657 aa16.75■□□□□ 0.27
COL6A1-207ENST00000612273 NLRP2Q9NX02 1062 aa16.75■□□□□ 0.27
COL6A1-207ENST00000612273 AKAP12Q02952 1782 aa16.75■□□□□ 0.27
COL6A1-207ENST00000612273 SLC27A2O14975 620 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 KDM4AO75164 1064 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 EPHA10Q5JZY3 1008 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 EVI5LQ96CN4 794 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 DACT1Q9NYF0 836 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 AXIN2Q9Y2T1 843 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 BICD2Q8TD16 824 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 ANKRD24Q8TF21 1146 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 KAZALD1Q96I82 304 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 GCP02774 474 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 AKAP4Q5JQC9 854 aa16.74■□□□□ 0.27
COL6A1-207ENST00000612273 NECTIN1Q15223 517 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 VPS53Q5VIR6 699 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 COPS6Q7L5N1 327 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 DDX17Q92841 729 aaKnown RBP16.73■□□□□ 0.27
COL6A1-207ENST00000612273 ZSWIM6Q9HCJ5 1215 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 PYCARDQ9ULZ3 195 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 DDX46Q7L014 1031 aaKnown RBP16.73■□□□□ 0.27
COL6A1-207ENST00000612273 XAGE3Q8WTP9 111 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 TTC41PQ6P2S7 1318 aa16.73■□□□□ 0.27
COL6A1-207ENST00000612273 NFATC2IPQ8NCF5 419 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 PKNOX2Q96KN3 472 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 KRT85P78386 507 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 GUCY1B3Q02153 619 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 FAM184AQ8NB25 1140 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 RGPD8O14715 1765 aaPredicted RBP16.72■□□□□ 0.27
COL6A1-207ENST00000612273 UBE3BQ7Z3V4 1068 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 NEUROD6Q96NK8 337 aa16.72■□□□□ 0.27
COL6A1-207ENST00000612273 ZNF330Q9Y3S2 320 aaPredicted RBP16.72■□□□□ 0.27
COL6A1-207ENST00000612273 CHST3Q7LGC8 479 aa16.71■□□□□ 0.27
COL6A1-207ENST00000612273 ERCC4Q92889 916 aaPredicted RBP16.71■□□□□ 0.27
COL6A1-207ENST00000612273 SPATA32Q96LK8 384 aa16.71■□□□□ 0.27
COL6A1-207ENST00000612273 NUP62CLQ9H1M0 184 aa16.71■□□□□ 0.27
COL6A1-207ENST00000612273 CSB-PGBD3P0DP91 1061 aa16.71■□□□□ 0.27
COL6A1-207ENST00000612273 MCM5P33992 734 aa16.71■□□□□ 0.27
COL6A1-207ENST00000612273 CCDC192P0DO97 292 aa16.71■□□□□ 0.26
COL6A1-207ENST00000612273 PTGS1P23219 599 aa16.71■□□□□ 0.26
COL6A1-207ENST00000612273 FTOQ9C0B1 505 aaKnown RBP eCLIP16.71■□□□□ 0.26
COL6A1-207ENST00000612273 TNMDQ9H2S6 317 aa16.71■□□□□ 0.26
COL6A1-207ENST00000612273 IGKV5-2P06315 115 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 LRMPQ12912 555 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 NRBP1Q9UHY1 535 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 H3BQV1 296 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 NEXNQ0ZGT2 675 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 IFFO2Q5TF58 517 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 LINS1Q8NG48 757 aa16.7■□□□□ 0.26
COL6A1-207ENST00000612273 ERC1Q8IUD2 1116 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 CABLES1Q8TDN4 633 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 DDX58O95786 925 aaKnown RBP16.69■□□□□ 0.26
COL6A1-207ENST00000612273 CCT2P78371 535 aaKnown RBP16.69■□□□□ 0.26
COL6A1-207ENST00000612273 TFCP2Q12800 502 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 ANO6Q4KMQ2 910 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 PIBF1Q8WXW3 757 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 MAP4K1Q92918 833 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
COL6A1-207ENST00000612273 CCDC85AQ96PX6 553 aaPredicted RBP16.69■□□□□ 0.26
COL6A1-207ENST00000612273 TRIM5Q9C035 493 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 SH2B1Q9NRF2 756 aaPredicted RBP16.69■□□□□ 0.26
COL6A1-207ENST00000612273 MAP3K11Q16584 847 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 USP16Q9Y5T5 823 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 CEMIPQ8WUJ3 1361 aa16.69■□□□□ 0.26
COL6A1-207ENST00000612273 RAB11FIP4Q86YS3 637 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 PSMA5P28066 241 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 DIP2AQ14689 1571 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 RNF20Q5VTR2 975 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 BRF1Q92994 677 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 DNAJC25Q9H1X3 360 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 RGPD1P0DJD0 1748 aa16.68■□□□□ 0.26
COL6A1-207ENST00000612273 TYRO3Q06418 890 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 CHRNA2Q15822 529 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 TMEM87AQ8NBN3 555 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 DBNDD2Q9BQY9 259 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 KCNF1Q9H3M0 494 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 NR1I2O75469 434 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 CCDC186Q7Z3E2 898 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 DYNC1I1O14576 645 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 ALDH1L1O75891 902 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 LETM1O95202 739 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-207ENST00000612273 TRHP20396 242 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-207ENST00000612273 UVSSAQ2YD98 709 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 ZNF496Q96IT1 587 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-207ENST00000612273 C16orf45Q96MC5 204 aaPredicted RBP16.67■□□□□ 0.26
COL6A1-207ENST00000612273 BABAM1Q9NWV8 329 aa16.67■□□□□ 0.26
COL6A1-207ENST00000612273 A0A0G2JLW4 131 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms