RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SMC4Q9NTJ3 1288 aa21.11■□□□□ 0.97
CCDC28A-202ENST00000611852 ABCC12Q96J65 1359 aa21.11■□□□□ 0.97
CCDC28A-202ENST00000611852 RNF123Q5XPI4 1314 aa21.1■□□□□ 0.97
CCDC28A-202ENST00000611852 PDE6BP35913 854 aa21.1■□□□□ 0.97
CCDC28A-202ENST00000611852 DNAAF4Q8WXU2 420 aa21.1■□□□□ 0.97
CCDC28A-202ENST00000611852 TRMT112Q9UI30 125 aaKnown RBP21.1■□□□□ 0.97
CCDC28A-202ENST00000611852 IGKV5-2P06315 115 aa21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 NEXNQ0ZGT2 675 aa21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 KLRG2A4D1S0 409 aaPredicted RBP21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 F6X3S4 739 aa21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 C2CD5Q86YS7 1000 aa21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 CCDC191Q8NCU4 936 aa21.09■□□□□ 0.97
CCDC28A-202ENST00000611852 RIC1Q4ADV7 1423 aa21.08■□□□□ 0.97
CCDC28A-202ENST00000611852 SH3TC1Q8TE82 1336 aa21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 H0YIN7 160 aa21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 BRPF1P55201 1214 aaPredicted RBP21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 SYNE4Q8N205 404 aa21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 YTHDC1Q96MU7 727 aaKnown RBP21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 WWC3Q9ULE0 1092 aa21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 PDZRN3Q9UPQ7 1066 aa21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 BRCA1P38398 1863 aaKnown RBP21.08■□□□□ 0.96
CCDC28A-202ENST00000611852 PTPRCP08575 1304 aa21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 GOLGB1Q14789 3259 aaKnown RBP21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 CWF19L2Q2TBE0 894 aaKnown RBP21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 SLC10A5Q5PT55 438 aa21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 CWC25Q9NXE8 425 aaPredicted RBP21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 COL11A2P13942 1736 aaPredicted RBP21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 TNRC6CQ9HCJ0 1690 aaKnown RBP21.07■□□□□ 0.96
CCDC28A-202ENST00000611852 DLEC1Q9Y238 1755 aa21.06■□□□□ 0.96
CCDC28A-202ENST00000611852 NEURL1BA8MQ27 555 aa21.06■□□□□ 0.96
CCDC28A-202ENST00000611852 LINS1Q8NG48 757 aa21.06■□□□□ 0.96
CCDC28A-202ENST00000611852 FAM89AQ96GI7 184 aa21.06■□□□□ 0.96
CCDC28A-202ENST00000611852 PIM2Q9P1W9 311 aa21.06■□□□□ 0.96
CCDC28A-202ENST00000611852 SRGNP10124 158 aa21.05■□□□□ 0.96
CCDC28A-202ENST00000611852 ZBTB38Q8NAP3 1195 aaPredicted RBP21.05■□□□□ 0.96
CCDC28A-202ENST00000611852 YBX3P16989 372 aaKnown RBP eCLIP21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 GPR162Q16538 588 aa21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 BEND3Q5T5X7 828 aa21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 PELP1Q8IZL8 1130 aaKnown RBP21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 HCLS1P14317 486 aaPredicted RBP21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 CRY2Q49AN0 593 aa21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 RTL5Q5HYW3 569 aaPredicted RBP21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 NOB1Q9ULX3 412 aaKnown RBP21.04■□□□□ 0.96
CCDC28A-202ENST00000611852 DCAF8L1A6NGE4 600 aa21.03■□□□□ 0.96
CCDC28A-202ENST00000611852 BCAR3O75815 825 aa21.03■□□□□ 0.96
CCDC28A-202ENST00000611852 PCCAP05165 728 aaPredicted RBP21.03■□□□□ 0.96
CCDC28A-202ENST00000611852 SLC4A10Q6U841 1118 aa21.03■□□□□ 0.96
CCDC28A-202ENST00000611852 C3orf67Q6ZVT6 689 aa21.03■□□□□ 0.96
CCDC28A-202ENST00000611852 GCKRQ14397 625 aa21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 STYK1Q6J9G0 422 aa21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 ZNF622Q969S3 477 aaKnown RBP eCLIP21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 MASTLQ96GX5 879 aa21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 NLRP3Q96P20 1036 aa21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 BCS1LQ9Y276 419 aa21.02■□□□□ 0.96
CCDC28A-202ENST00000611852 KIF16BQ96L93 1317 aa21.01■□□□□ 0.95
CCDC28A-202ENST00000611852 DDX60Q8IY21 1712 aaKnown RBP21.01■□□□□ 0.95
CCDC28A-202ENST00000611852 NPR1P16066 1061 aa21.01■□□□□ 0.95
CCDC28A-202ENST00000611852 DALRD3Q5D0E6 543 aaKnown RBP21.01■□□□□ 0.95
CCDC28A-202ENST00000611852 UTRNP46939 3433 aa21.01■□□□□ 0.95
CCDC28A-202ENST00000611852 IRS4O14654 1257 aaPredicted RBP21■□□□□ 0.95
CCDC28A-202ENST00000611852 TTLL6Q8N841 843 aa21■□□□□ 0.95
CCDC28A-202ENST00000611852 JARID2Q92833 1246 aaPredicted RBP21■□□□□ 0.95
CCDC28A-202ENST00000611852 SRCIN1Q9C0H9 1055 aa20.99■□□□□ 0.95
CCDC28A-202ENST00000611852 LAMB2P55268 1798 aa20.99■□□□□ 0.95
CCDC28A-202ENST00000611852 H7C1W4 665 aa20.99■□□□□ 0.95
CCDC28A-202ENST00000611852 ARHGAP45Q92619 1136 aa20.99■□□□□ 0.95
CCDC28A-202ENST00000611852 CNKSR1Q969H4 720 aa20.99■□□□□ 0.95
CCDC28A-202ENST00000611852 CDHR2Q9BYE9 1310 aa20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 ALDH1L1O75891 902 aa20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 HOXA10P31260 410 aaPredicted RBP20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 RPGRQ92834 1020 aaKnown RBP20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 API5Q9BZZ5 524 aaKnown RBP20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 ARFGEF1Q9Y6D6 1849 aa20.98■□□□□ 0.95
CCDC28A-202ENST00000611852 GRIN3BO60391 1043 aa20.97■□□□□ 0.95
CCDC28A-202ENST00000611852 UBE3BQ7Z3V4 1068 aa20.97■□□□□ 0.95
CCDC28A-202ENST00000611852 IPO8O15397 1037 aaKnown RBP20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 HSP90B1P14625 803 aaKnown RBP20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 CASP7P55210 303 aa20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 PRPF40BQ6NWY9 871 aaKnown RBP20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 FRAT1Q92837 279 aaPredicted RBP20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 SLX4Q8IY92 1834 aa20.96■□□□□ 0.95
CCDC28A-202ENST00000611852 ALDH1B1P30837 517 aa20.95■□□□□ 0.94
CCDC28A-202ENST00000611852 SF3B3Q15393 1217 aaKnown RBP20.95■□□□□ 0.94
CCDC28A-202ENST00000611852 RBM17Q96I25 401 aaKnown RBP20.95■□□□□ 0.94
CCDC28A-202ENST00000611852 CACNA1SQ13698 1873 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 PDE8AO60658 829 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 CRAMP1Q96RY5 1269 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 GRM8O00222 908 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 TRIM27P14373 513 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 ATF7IPQ6VMQ6 1270 aa20.94■□□□□ 0.94
CCDC28A-202ENST00000611852 C9orf78Q9NZ63 289 aaPredicted RBP20.93■□□□□ 0.94
CCDC28A-202ENST00000611852 CCT4P50991 539 aaKnown RBP20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 ZKSCAN2Q63HK3 967 aa20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 C7orf43Q8WVR3 580 aa20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 PLA2G12BQ9BX93 195 aa20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 RCAN3Q9UKA8 241 aa20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 ABCC4O15439 1325 aa20.92■□□□□ 0.94
CCDC28A-202ENST00000611852 C21orf2O43822 256 aa20.91■□□□□ 0.94
CCDC28A-202ENST00000611852 CTSWP56202 376 aa20.91■□□□□ 0.94
CCDC28A-202ENST00000611852 DDX46Q7L014 1031 aaKnown RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms