RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-240	ENST00000610489	IGKV5-2	P06315	115 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	POLD1	P28340	1107 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	PTGER2	P43116	358 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	TRIM28	Q13263	835 aa	Known RBP	13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	PARP10	Q53GL7	1025 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	SLC4A10	Q6U841	1118 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	NLRP10	Q86W26	655 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	SPON1	Q9HCB6	807 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	PARP3	Q9Y6F1	533 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	ABCC4	O15439	1325 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	BEND3	Q5T5X7	828 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	LINS1	Q8NG48	757 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	TNN	Q9UQP3	1299 aa		13.12	□□□□□ -0.31
SYNE1-240	ENST00000610489	LRP5	O75197	1615 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	KIF13B	Q9NQT8	1826 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	LAMB2	P55268	1798 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	NEURL1B	A8MQ27	555 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	SERPINB2	P05120	415 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	CWF19L2	Q2TBE0	894 aa	Known RBP	13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	CCDC191	Q8NCU4	936 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	ANKRD31	Q8N7Z5	1873 aa		13.11	□□□□□ -0.31
SYNE1-240	ENST00000610489	SUSD4	Q5VX71	490 aa		13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	CLUAP1	Q96AJ1	413 aa		13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	SRCIN1	Q9C0H9	1055 aa		13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	CWC25	Q9NXE8	425 aa	Predicted RBP	13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	DDX60	Q8IY21	1712 aa	Known RBP	13.1	□□□□□ -0.31
SYNE1-240	ENST00000610489	FAM177B	A6PVY3	158 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	PLIN1	O60240	522 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	ALDH1L1	O75891	902 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	NTSR2	O95665	410 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	PPP1R42	Q7Z4L9	355 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	FTSJ3	Q8IY81	847 aa	Known RBP	13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	CNBD1	Q8NA66	436 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	UTP14A	Q9BVJ6	771 aa	Known RBP	13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	NYX	Q9GZU5	481 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	MYH3	P11055	1940 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	CCT4	P50991	539 aa	Known RBP	13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	RRP1	P56182	461 aa	Known RBP	13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	GCKR	Q14397	625 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	PRR5L	Q6MZQ0	368 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	TPTE2	Q6XPS3	522 aa		13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	DZIP1L	Q8IYY4	767 aa	Known RBP	13.09	□□□□□ -0.31
SYNE1-240	ENST00000610489	RNF123	Q5XPI4	1314 aa		13.08	□□□□□ -0.31
SYNE1-240	ENST00000610489	MS4A1	P11836	297 aa		13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	RLBP1	P12271	317 aa		13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	INTS3	Q68E01	1043 aa	Known RBP	13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	TRMT112	Q9UI30	125 aa	Known RBP	13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	C10orf71	Q711Q0	1435 aa		13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.08	□□□□□ -0.32
SYNE1-240	ENST00000610489	NPHP1	O15259	732 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	CENPB	P07199	599 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	NUTM1	Q86Y26	1132 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	TMEM57	Q8N5G2	664 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	SH3TC1	Q8TE82	1336 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	ABCC12	Q96J65	1359 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	PCCA	P05165	728 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	GTF2E1	P29083	439 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	RIC1	Q4ADV7	1423 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	ERFE	Q4G0M1	354 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	PANK1	Q8TE04	598 aa		13.07	□□□□□ -0.32
SYNE1-240	ENST00000610489	KIAA1551	Q9HCM1	1747 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	PRKCSH	P14314	528 aa	Predicted RBP	13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	ST5	P78524	1137 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	PDE3A	Q14432	1141 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	SYNE4	Q8N205	404 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	CCDC24	Q8N4L8	307 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	FAM89A	Q96GI7	184 aa		13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489	COL11A2	P13942	1736 aa	Predicted RBP	13.06	□□□□□ -0.32
SYNE1-240	ENST00000610489		H7C1W4	665 aa		13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	GRM8	O00222	908 aa		13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	RTL5	Q5HYW3	569 aa	Predicted RBP	13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	C20orf194	Q5TEA3	1177 aa		13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	UBE3B	Q7Z3V4	1068 aa		13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	DLEC1	Q9Y238	1755 aa		13.05	□□□□□ -0.32
SYNE1-240	ENST00000610489	CASP7	P55210	303 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	JARID2	Q92833	1246 aa	Predicted RBP	13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	UTY	O14607	1347 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	CDHR2	Q9BYE9	1310 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	IRS4	O14654	1257 aa	Predicted RBP	13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	SLC10A5	Q5PT55	438 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	ITPRIP	Q8IWB1	547 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	BRIP1	Q9BX63	1249 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	USP44	Q9H0E7	712 aa		13.04	□□□□□ -0.32
SYNE1-240	ENST00000610489	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.03	□□□□□ -0.32
SYNE1-240	ENST00000610489	HCLS1	P14317	486 aa	Predicted RBP	13.03	□□□□□ -0.32
SYNE1-240	ENST00000610489	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.03	□□□□□ -0.32
SYNE1-240	ENST00000610489	BRCA1	P38398	1863 aa	Known RBP	13.03	□□□□□ -0.32
SYNE1-240	ENST00000610489	CAPN15	O75808	1086 aa		13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	MVP	Q14764	893 aa	Known RBP	13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	MEIS3	Q99687	375 aa		13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	COG6	Q9Y2V7	657 aa		13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	CD2AP	Q9Y5K6	639 aa		13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	CACNA1S	Q13698	1873 aa		13.02	□□□□□ -0.32
SYNE1-240	ENST00000610489	HSP90B1	P14625	803 aa	Known RBP	13.02	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms