RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 RNF123Q5XPI4 1314 aa18.37■□□□□ 0.53
USE1-210ENST00000601662 UBN2Q6ZU65 1347 aa18.37■□□□□ 0.53
USE1-210ENST00000601662 PTPRCP08575 1304 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 TCIRG1Q13488 830 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 CHD4Q14839 1912 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 ERFEQ4G0M1 354 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 HSP90AB3PQ58FF7 597 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 ZKSCAN2Q63HK3 967 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 PLBD2Q8NHP8 589 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 FRAT1Q92837 279 aaPredicted RBP18.36■□□□□ 0.53
USE1-210ENST00000601662 ATP10DQ9P241 1426 aa18.36■□□□□ 0.53
USE1-210ENST00000601662 NOB1Q9ULX3 412 aaKnown RBP18.36■□□□□ 0.53
USE1-210ENST00000601662 CACNA1FO60840 1977 aa18.35■□□□□ 0.53
USE1-210ENST00000601662 RRP1P56182 461 aaKnown RBP18.35■□□□□ 0.53
USE1-210ENST00000601662 RIC3Q7Z5B4 369 aa18.35■□□□□ 0.53
USE1-210ENST00000601662 PDZRN3Q9UPQ7 1066 aa18.35■□□□□ 0.53
USE1-210ENST00000601662 ATP5J2-PTCD1G3V325 749 aa18.34■□□□□ 0.53
USE1-210ENST00000601662 PARP10Q53GL7 1025 aa18.34■□□□□ 0.53
USE1-210ENST00000601662 PPP1R42Q7Z4L9 355 aa18.34■□□□□ 0.53
USE1-210ENST00000601662 UTP14AQ9BVJ6 771 aaKnown RBP18.34■□□□□ 0.53
USE1-210ENST00000601662 API5Q9BZZ5 524 aaKnown RBP18.34■□□□□ 0.53
USE1-210ENST00000601662 ANKRD31Q8N7Z5 1873 aa18.34■□□□□ 0.53
USE1-210ENST00000601662 DDX58O95786 925 aaKnown RBP18.33■□□□□ 0.52
USE1-210ENST00000601662 SRGNP10124 158 aa18.33■□□□□ 0.52
USE1-210ENST00000601662 FLIIQ13045 1269 aa18.33■□□□□ 0.52
USE1-210ENST00000601662 ATF7IPQ6VMQ6 1270 aa18.33■□□□□ 0.52
USE1-210ENST00000601662 MASTLQ96GX5 879 aa18.33■□□□□ 0.52
USE1-210ENST00000601662 ABCC12Q96J65 1359 aa18.32■□□□□ 0.52
USE1-210ENST00000601662 NTSR2O95665 410 aa18.32■□□□□ 0.52
USE1-210ENST00000601662 PDE3AQ14432 1141 aa18.32■□□□□ 0.52
USE1-210ENST00000601662 NLRP10Q86W26 655 aa18.32■□□□□ 0.52
USE1-210ENST00000601662 TRMT112Q9UI30 125 aaKnown RBP18.32■□□□□ 0.52
USE1-210ENST00000601662 BRCA1P38398 1863 aaKnown RBP18.31■□□□□ 0.52
USE1-210ENST00000601662 STYK1Q6J9G0 422 aa18.31■□□□□ 0.52
USE1-210ENST00000601662 CNKSR1Q969H4 720 aa18.31■□□□□ 0.52
USE1-210ENST00000601662 C21orf2O43822 256 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 PLIN1O60240 522 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 NEFLP07196 543 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 NPR1P16066 1061 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 FKBP5Q13451 457 aaPredicted RBP18.3■□□□□ 0.52
USE1-210ENST00000601662 G2E3Q7L622 706 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 SYNE4Q8N205 404 aa18.3■□□□□ 0.52
USE1-210ENST00000601662 KLRG2A4D1S0 409 aaPredicted RBP18.29■□□□□ 0.52
USE1-210ENST00000601662 ZNF784Q8NCA9 323 aaPredicted RBP18.29■□□□□ 0.52
USE1-210ENST00000601662 MYD88Q99836 296 aa18.29■□□□□ 0.52
USE1-210ENST00000601662 HCLS1P14317 486 aaPredicted RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 TRIM27P14373 513 aa18.28■□□□□ 0.52
USE1-210ENST00000601662 RTL5Q5HYW3 569 aaPredicted RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 PRPF40BQ6NWY9 871 aaKnown RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 KSR2Q6VAB6 950 aa18.28■□□□□ 0.52
USE1-210ENST00000601662 FTSJ3Q8IY81 847 aaKnown RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 DZIP1LQ8IYY4 767 aaKnown RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 ISCA1Q9BUE6 129 aa18.28■□□□□ 0.52
USE1-210ENST00000601662 MAP3K2Q9Y2U5 619 aa18.28■□□□□ 0.52
USE1-210ENST00000601662 IBTKQ9P2D0 1353 aaPredicted RBP18.28■□□□□ 0.52
USE1-210ENST00000601662 COL11A2P13942 1736 aaPredicted RBP18.27■□□□□ 0.52
USE1-210ENST00000601662 RASSF7Q02833 373 aa18.27■□□□□ 0.52
USE1-210ENST00000601662 C3orf67Q6ZVT6 689 aa18.27■□□□□ 0.52
USE1-210ENST00000601662 RPGRQ92834 1020 aaKnown RBP18.27■□□□□ 0.52
USE1-210ENST00000601662 NLRP3Q96P20 1036 aa18.27■□□□□ 0.52
USE1-210ENST00000601662 SH3TC1Q8TE82 1336 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 ARFGEF1Q9Y6D6 1849 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 PI4KAP2A4QPH2 592 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 C9orf131Q5VYM1 1079 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 PI4KAP1Q8N8J0 262 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 ZNF526Q8TF50 670 aaPredicted RBP18.26■□□□□ 0.51
USE1-210ENST00000601662 FAM89AQ96GI7 184 aa18.26■□□□□ 0.51
USE1-210ENST00000601662 DLEC1Q9Y238 1755 aa18.25■□□□□ 0.51
USE1-210ENST00000601662 ALDH1B1P30837 517 aa18.25■□□□□ 0.51
USE1-210ENST00000601662 SLC10A5Q5PT55 438 aa18.25■□□□□ 0.51
USE1-210ENST00000601662 METTL22Q9BUU2 404 aaPredicted RBP18.25■□□□□ 0.51
USE1-210ENST00000601662 RNF181Q9P0P0 153 aa18.25■□□□□ 0.51
USE1-210ENST00000601662 SLX4Q8IY92 1834 aa18.24■□□□□ 0.51
USE1-210ENST00000601662 CCT4P50991 539 aaKnown RBP18.24■□□□□ 0.51
USE1-210ENST00000601662 CRY2Q49AN0 593 aa18.24■□□□□ 0.51
USE1-210ENST00000601662 DNAAF4Q8WXU2 420 aa18.24■□□□□ 0.51
USE1-210ENST00000601662 JARID2Q92833 1246 aaPredicted RBP18.24■□□□□ 0.51
USE1-210ENST00000601662 CLUAP1Q96AJ1 413 aa18.24■□□□□ 0.51
USE1-210ENST00000601662 RBM17Q96I25 401 aaKnown RBP18.24■□□□□ 0.51
USE1-210ENST00000601662 CHMP4BQ9H444 224 aaKnown RBP18.24■□□□□ 0.51
USE1-210ENST00000601662 ANKRD36CQ5JPF3 1778 aa18.24■□□□□ 0.51
USE1-210ENST00000601662 TNRC6CQ9HCJ0 1690 aaKnown RBP18.23■□□□□ 0.51
USE1-210ENST00000601662 NEXNQ0ZGT2 675 aa18.23■□□□□ 0.51
USE1-210ENST00000601662 TRIM28Q13263 835 aaKnown RBP18.23■□□□□ 0.51
USE1-210ENST00000601662 OLFM4Q6UX06 510 aa18.23■□□□□ 0.51
USE1-210ENST00000601662 ABCC4O15439 1325 aa18.23■□□□□ 0.51
USE1-210ENST00000601662 CACNA1SQ13698 1873 aa18.22■□□□□ 0.51
USE1-210ENST00000601662 NFKBIEO00221 500 aa18.22■□□□□ 0.51
USE1-210ENST00000601662 INTS3Q68E01 1043 aaKnown RBP18.22■□□□□ 0.51
USE1-210ENST00000601662 SLC4A10Q6U841 1118 aa18.22■□□□□ 0.51
USE1-210ENST00000601662 CWC25Q9NXE8 425 aaPredicted RBP18.22■□□□□ 0.51
USE1-210ENST00000601662 ARFGEF2Q9Y6D5 1785 aa18.22■□□□□ 0.51
USE1-210ENST00000601662 ADCY9O60503 1353 aa18.21■□□□□ 0.51
USE1-210ENST00000601662 F6X3S4 739 aa18.21■□□□□ 0.51
USE1-210ENST00000601662 CCDC191Q8NCU4 936 aa18.21■□□□□ 0.51
USE1-210ENST00000601662 PANK1Q8TE04 598 aa18.21■□□□□ 0.51
USE1-210ENST00000601662 IRS4O14654 1257 aaPredicted RBP18.2■□□□□ 0.5
USE1-210ENST00000601662 HOXA10P31260 410 aaPredicted RBP18.2■□□□□ 0.5
USE1-210ENST00000601662 CWF19L2Q2TBE0 894 aaKnown RBP18.2■□□□□ 0.5
USE1-210ENST00000601662 CCDC93Q567U6 631 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms