RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 COL15A1P39059 1388 aa18.8■□□□□ 0.6
VRK3-218ENST00000600031 SMARCA5O60264 1052 aaPredicted RBP18.8■□□□□ 0.6
VRK3-218ENST00000600031 GPTP24298 496 aa18.8■□□□□ 0.6
VRK3-218ENST00000600031 HSP90AB3PQ58FF7 597 aa18.8■□□□□ 0.6
VRK3-218ENST00000600031 RC3H1Q5TC82 1133 aaKnown RBP18.8■□□□□ 0.6
VRK3-218ENST00000600031 CAMTA2O94983 1202 aa18.79■□□□□ 0.6
VRK3-218ENST00000600031 SMIM5Q71RC9 77 aa18.79■□□□□ 0.6
VRK3-218ENST00000600031 TAF1LQ8IZX4 1826 aa18.79■□□□□ 0.6
VRK3-218ENST00000600031 LRRC4BQ9NT99 713 aa18.79■□□□□ 0.6
VRK3-218ENST00000600031 ANKRD36CQ5JPF3 1778 aa18.78■□□□□ 0.6
VRK3-218ENST00000600031 NLRP10Q86W26 655 aa18.78■□□□□ 0.6
VRK3-218ENST00000600031 DAXXQ9UER7 740 aaPredicted RBP18.78■□□□□ 0.6
VRK3-218ENST00000600031 SURF6O75683 361 aaKnown RBP18.77■□□□□ 0.6
VRK3-218ENST00000600031 C16orf71Q8IYS4 520 aaPredicted RBP18.77■□□□□ 0.6
VRK3-218ENST00000600031 RABL6Q3YEC7 729 aaPredicted RBP18.77■□□□□ 0.6
VRK3-218ENST00000600031 RPS6KA4O75676 772 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 FOXO4P98177 505 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 ZNF34Q8IZ26 560 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 UBN2Q6ZU65 1347 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 GNPATO15228 680 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 FAM89AQ96GI7 184 aa18.76■□□□□ 0.59
VRK3-218ENST00000600031 PA2G4Q9UQ80 394 aaKnown RBP18.76■□□□□ 0.59
VRK3-218ENST00000600031 PCCAP05165 728 aaPredicted RBP18.75■□□□□ 0.59
VRK3-218ENST00000600031 AMIGO3Q86WK7 504 aa18.75■□□□□ 0.59
VRK3-218ENST00000600031 ZBTB38Q8NAP3 1195 aaPredicted RBP18.75■□□□□ 0.59
VRK3-218ENST00000600031 LRRCC1Q9C099 1032 aa18.75■□□□□ 0.59
VRK3-218ENST00000600031 C4BP0C0L5 1744 aa18.75■□□□□ 0.59
VRK3-218ENST00000600031 OTUD7AQ8TE49 926 aaPredicted RBP18.74■□□□□ 0.59
VRK3-218ENST00000600031 RAB11FIP3O75154 756 aa18.74■□□□□ 0.59
VRK3-218ENST00000600031 LMBR1LQ6UX01 489 aa18.74■□□□□ 0.59
VRK3-218ENST00000600031 SYNE4Q8N205 404 aa18.74■□□□□ 0.59
VRK3-218ENST00000600031 RTCBQ9Y3I0 505 aaKnown RBP18.73■□□□□ 0.59
VRK3-218ENST00000600031 BCORQ6W2J9 1755 aa18.73■□□□□ 0.59
VRK3-218ENST00000600031 SLC27A3Q5K4L6 730 aa18.73■□□□□ 0.59
VRK3-218ENST00000600031 PLEKHM2Q8IWE5 1019 aa18.73■□□□□ 0.59
VRK3-218ENST00000600031 KLHDC4Q8TBB5 520 aa18.73■□□□□ 0.59
VRK3-218ENST00000600031 RFX5P48382 616 aaPredicted RBP18.72■□□□□ 0.59
VRK3-218ENST00000600031 PROM2Q8N271 834 aa18.72■□□□□ 0.59
VRK3-218ENST00000600031 SUSD4Q5VX71 490 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 RHPN1Q8TCX5 695 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 TRMT112Q9UI30 125 aaKnown RBP18.71■□□□□ 0.59
VRK3-218ENST00000600031 HSP90AB4PQ58FF6 505 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 CLEC4GQ6UXB4 293 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 AK7Q96M32 723 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 IL1RAPL2Q9NP60 686 aa18.71■□□□□ 0.59
VRK3-218ENST00000600031 APBA3O96018 575 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 OS9Q13438 667 aaPredicted RBP18.7■□□□□ 0.58
VRK3-218ENST00000600031 TXNRD1Q16881 649 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 ARHGEF1Q92888 912 aaKnown RBP18.7■□□□□ 0.58
VRK3-218ENST00000600031 KIF1BPQ96EK5 621 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 BCL2L12Q9HB09 334 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 SRP68Q9UHB9 627 aaKnown RBP18.7■□□□□ 0.58
VRK3-218ENST00000600031 NARFQ9UHQ1 456 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 NIP7Q9Y221 180 aaKnown RBP eCLIP18.7■□□□□ 0.58
VRK3-218ENST00000600031 ZNF652Q9Y2D9 606 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 CHMP3Q9Y3E7 222 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 CDHR2Q9BYE9 1310 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 PTPN12Q05209 780 aaKnown RBP18.7■□□□□ 0.58
VRK3-218ENST00000600031 USPL1Q5W0Q7 1092 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 PLA2G12BQ9BX93 195 aa18.7■□□□□ 0.58
VRK3-218ENST00000600031 PLSCR1O15162 318 aa18.69■□□□□ 0.58
VRK3-218ENST00000600031 SIL1Q9H173 461 aa18.69■□□□□ 0.58
VRK3-218ENST00000600031 COPRSQ9NQ92 184 aa18.69■□□□□ 0.58
VRK3-218ENST00000600031 FAM177BA6PVY3 158 aa18.68■□□□□ 0.58
VRK3-218ENST00000600031 PHF14O94880 888 aa18.68■□□□□ 0.58
VRK3-218ENST00000600031 PARP10Q53GL7 1025 aa18.68■□□□□ 0.58
VRK3-218ENST00000600031 SCN7AQ01118 1682 aa18.68■□□□□ 0.58
VRK3-218ENST00000600031 IRS4O14654 1257 aaPredicted RBP18.68■□□□□ 0.58
VRK3-218ENST00000600031 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.58
VRK3-218ENST00000600031 SALL3Q9BXA9 1300 aa18.68■□□□□ 0.58
VRK3-218ENST00000600031 SASH1O94885 1247 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 TRAPPC3LQ5T215 181 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 UTP14AQ9BVJ6 771 aaKnown RBP18.67■□□□□ 0.58
VRK3-218ENST00000600031 RGL2O15211 777 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 ZPR1O75312 459 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 CSF1RP07333 972 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 ERC1Q8IUD2 1116 aa18.67■□□□□ 0.58
VRK3-218ENST00000600031 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.67■□□□□ 0.58
VRK3-218ENST00000600031 BMP2KLQ5H9B9 411 aa18.66■□□□□ 0.58
VRK3-218ENST00000600031 TBC1D9BQ66K14 1250 aa18.66■□□□□ 0.58
VRK3-218ENST00000600031 CCDC85AQ96PX6 553 aaPredicted RBP18.66■□□□□ 0.58
VRK3-218ENST00000600031 C4AP0C0L4 1744 aa18.66■□□□□ 0.58
VRK3-218ENST00000600031 SH3TC1Q8TE82 1336 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 NTSR2O95665 410 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 PDE1AP54750 535 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 NFKBIBQ15653 356 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 UBR3Q6ZT12 1888 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 TNS1Q9HBL0 1735 aaKnown RBP18.65■□□□□ 0.58
VRK3-218ENST00000600031 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.65■□□□□ 0.58
VRK3-218ENST00000600031 GSPT1P15170 499 aaKnown RBP18.65■□□□□ 0.58
VRK3-218ENST00000600031 RFC4P35249 363 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 BICDL1Q6ZP65 573 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 NUTM1Q86Y26 1132 aa18.65■□□□□ 0.58
VRK3-218ENST00000600031 USP42Q9H9J4 1324 aaKnown RBP18.64■□□□□ 0.57
VRK3-218ENST00000600031 PDE8AO60658 829 aa18.64■□□□□ 0.57
VRK3-218ENST00000600031 SLC4A3P48751 1232 aa18.64■□□□□ 0.57
VRK3-218ENST00000600031 CTSWP56202 376 aa18.64■□□□□ 0.57
VRK3-218ENST00000600031 TTC22Q5TAA0 569 aa18.64■□□□□ 0.57
VRK3-218ENST00000600031 TSHZ3Q63HK5 1081 aa18.64■□□□□ 0.57
VRK3-218ENST00000600031 TTLL11Q8NHH1 800 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms