RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 NMRK2Q9NPI5 230 aa15.8■□□□□ 0.12
LIG1-217ENST00000599165 DBF4Q9UBU7 674 aaPredicted RBP15.8■□□□□ 0.12
LIG1-217ENST00000599165 LTBP3Q9NS15 1303 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 LMNB1P20700 586 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 CALD1Q05682 793 aaKnown RBP15.79■□□□□ 0.12
LIG1-217ENST00000599165 TCIRG1Q13488 830 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 NLRP10Q86W26 655 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 SYNE4Q8N205 404 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 TAF1P21675 1872 aa15.79■□□□□ 0.12
LIG1-217ENST00000599165 PARP10Q53GL7 1025 aa15.78■□□□□ 0.12
LIG1-217ENST00000599165 SLC10A5Q5PT55 438 aa15.78■□□□□ 0.12
LIG1-217ENST00000599165 PLBD2Q8NHP8 589 aa15.78■□□□□ 0.12
LIG1-217ENST00000599165 PHAXQ9H814 394 aaKnown RBP15.78■□□□□ 0.12
LIG1-217ENST00000599165 COL4A1P02462 1669 aa15.78■□□□□ 0.12
LIG1-217ENST00000599165 HOXA10P31260 410 aaPredicted RBP15.77■□□□□ 0.12
LIG1-217ENST00000599165 ISCA1Q9BUE6 129 aa15.77■□□□□ 0.12
LIG1-217ENST00000599165 IL16Q14005 1332 aa15.76■□□□□ 0.11
LIG1-217ENST00000599165 ZC3H4Q9UPT8 1303 aaKnown RBP15.76■□□□□ 0.11
LIG1-217ENST00000599165 GTF2E1P29083 439 aaPredicted RBP15.76■□□□□ 0.11
LIG1-217ENST00000599165 ANKRD13DQ6ZTN6 518 aa15.76■□□□□ 0.11
LIG1-217ENST00000599165 ZNF428Q96B54 188 aa15.76■□□□□ 0.11
LIG1-217ENST00000599165 UTP14AQ9BVJ6 771 aaKnown RBP15.76■□□□□ 0.11
LIG1-217ENST00000599165 SPINK5Q9NQ38 1064 aaPredicted RBP15.76■□□□□ 0.11
LIG1-217ENST00000599165 HYPKQ9NX55 129 aa15.76■□□□□ 0.11
LIG1-217ENST00000599165 COL4A5P29400 1685 aa15.76■□□□□ 0.11
LIG1-217ENST00000599165 HSP90AB3PQ58FF7 597 aa15.75■□□□□ 0.11
LIG1-217ENST00000599165 PPP1R42Q7Z4L9 355 aa15.75■□□□□ 0.11
LIG1-217ENST00000599165 TAOK3Q9H2K8 898 aa15.75■□□□□ 0.11
LIG1-217ENST00000599165 WDR90Q96KV7 1748 aa15.74■□□□□ 0.11
LIG1-217ENST00000599165 RNF123Q5XPI4 1314 aa15.74■□□□□ 0.11
LIG1-217ENST00000599165 FANCIQ9NVI1 1328 aa15.74■□□□□ 0.11
LIG1-217ENST00000599165 CCDC93Q567U6 631 aa15.74■□□□□ 0.11
LIG1-217ENST00000599165 ATP5J2-PTCD1G3V325 749 aa15.73■□□□□ 0.11
LIG1-217ENST00000599165 HCLS1P14317 486 aaPredicted RBP15.73■□□□□ 0.11
LIG1-217ENST00000599165 ALDH1B1P30837 517 aa15.73■□□□□ 0.11
LIG1-217ENST00000599165 FAM9BQ8IZU0 186 aa15.73■□□□□ 0.11
LIG1-217ENST00000599165 CRAMP1Q96RY5 1269 aa15.73■□□□□ 0.11
LIG1-217ENST00000599165 SALL2Q9Y467 1007 aaPredicted RBP15.73■□□□□ 0.11
LIG1-217ENST00000599165 CACNA1FO60840 1977 aa15.73■□□□□ 0.11
LIG1-217ENST00000599165 GLTPD2A6NH11 291 aa15.72■□□□□ 0.11
LIG1-217ENST00000599165 POTECB2RU33 542 aa15.72■□□□□ 0.11
LIG1-217ENST00000599165 SOGA3Q5TF21 947 aa15.72■□□□□ 0.11
LIG1-217ENST00000599165 LRRC37AA6NMS7 1700 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 ABCC4O15439 1325 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 SH3TC1Q8TE82 1336 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 ZNF521Q96K83 1311 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 TCERG1O14776 1098 aaKnown RBP15.71■□□□□ 0.11
LIG1-217ENST00000599165 FKBP4Q02790 459 aaKnown RBP eCLIP15.71■□□□□ 0.11
LIG1-217ENST00000599165 TRIM28Q13263 835 aaKnown RBP15.71■□□□□ 0.11
LIG1-217ENST00000599165 G2E3Q7L622 706 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 WDR63Q8IWG1 891 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 RRAGCQ9HB90 399 aa15.71■□□□□ 0.11
LIG1-217ENST00000599165 ZNF277Q9NRM2 450 aaPredicted RBP15.71■□□□□ 0.11
LIG1-217ENST00000599165 TRMT112Q9UI30 125 aaKnown RBP15.71■□□□□ 0.11
LIG1-217ENST00000599165 KDM2BQ8NHM5 1336 aa15.7■□□□□ 0.1
LIG1-217ENST00000599165 TWISTNBQ3B726 338 aaPredicted RBP15.7■□□□□ 0.1
LIG1-217ENST00000599165 CCDC30Q5VVM6 783 aa15.7■□□□□ 0.1
LIG1-217ENST00000599165 RPGRQ92834 1020 aaKnown RBP15.7■□□□□ 0.1
LIG1-217ENST00000599165 FAM89AQ96GI7 184 aa15.7■□□□□ 0.1
LIG1-217ENST00000599165 NLRP3Q96P20 1036 aa15.7■□□□□ 0.1
LIG1-217ENST00000599165 TOMM70O94826 608 aa15.69■□□□□ 0.1
LIG1-217ENST00000599165 RBM17Q96I25 401 aaKnown RBP15.69■□□□□ 0.1
LIG1-217ENST00000599165 DUOX1Q9NRD9 1551 aa15.69■□□□□ 0.1
LIG1-217ENST00000599165 PPEF1O14829 653 aaPredicted RBP15.68■□□□□ 0.1
LIG1-217ENST00000599165 VAMP4O75379 141 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 GOLGA2Q08379 1002 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 RIC3Q7Z5B4 369 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 RTKN2Q8IZC4 609 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 PSMD1Q99460 953 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 MYD88Q99836 296 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 LTBP1Q14766 1721 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 ZNF541Q9H0D2 1346 aa15.68■□□□□ 0.1
LIG1-217ENST00000599165 CEP350Q5VT06 3117 aa15.67■□□□□ 0.1
LIG1-217ENST00000599165 EXOSC9Q06265 439 aaKnown RBP15.67■□□□□ 0.1
LIG1-217ENST00000599165 METTL22Q9BUU2 404 aaPredicted RBP15.67■□□□□ 0.1
LIG1-217ENST00000599165 DDNO94850 711 aaPredicted RBP15.66■□□□□ 0.1
LIG1-217ENST00000599165 IGKV5-2P06315 115 aa15.66■□□□□ 0.1
LIG1-217ENST00000599165 IARSP41252 1262 aaKnown RBP15.66■□□□□ 0.1
LIG1-217ENST00000599165 SF3B3Q15393 1217 aaKnown RBP15.66■□□□□ 0.1
LIG1-217ENST00000599165 RTL5Q5HYW3 569 aaPredicted RBP15.66■□□□□ 0.1
LIG1-217ENST00000599165 CC2D2BQ6DHV5 1058 aa15.66■□□□□ 0.1
LIG1-217ENST00000599165 RBM46Q8TBY0 533 aaKnown RBP15.66■□□□□ 0.1
LIG1-217ENST00000599165 MAP3K2Q9Y2U5 619 aa15.66■□□□□ 0.1
LIG1-217ENST00000599165 ATP6V0A2Q9Y487 856 aa15.66■□□□□ 0.1
LIG1-217ENST00000599165 PI4KAP2A4QPH2 592 aa15.65■□□□□ 0.1
LIG1-217ENST00000599165 HSPA6P17066 643 aa15.65■□□□□ 0.1
LIG1-217ENST00000599165 KSR2Q6VAB6 950 aa15.65■□□□□ 0.1
LIG1-217ENST00000599165 PI4KAP1Q8N8J0 262 aa15.65■□□□□ 0.1
LIG1-217ENST00000599165 ZBTB38Q8NAP3 1195 aaPredicted RBP15.65■□□□□ 0.1
LIG1-217ENST00000599165 JARID2Q92833 1246 aaPredicted RBP15.65■□□□□ 0.1
LIG1-217ENST00000599165 SCN4AP35499 1836 aa15.65■□□□□ 0.1
LIG1-217ENST00000599165 MYH3P11055 1940 aa15.64■□□□□ 0.09
LIG1-217ENST00000599165 FZD9O00144 591 aa15.64■□□□□ 0.09
LIG1-217ENST00000599165 IRS4O14654 1257 aaPredicted RBP15.64■□□□□ 0.09
LIG1-217ENST00000599165 SLC4A2P04920 1241 aa15.64■□□□□ 0.09
LIG1-217ENST00000599165 GRAPQ13588 217 aa15.64■□□□□ 0.09
LIG1-217ENST00000599165 CCDC191Q8NCU4 936 aa15.64■□□□□ 0.09
LIG1-217ENST00000599165 GRAPLQ8TC17 118 aaPredicted RBP15.64■□□□□ 0.09
LIG1-217ENST00000599165 CELF1Q92879 486 aaKnown RBP15.64■□□□□ 0.09
LIG1-217ENST00000599165 ADAMTSL1Q8N6G6 1762 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms