RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NYXQ9GZU5 481 aa18.19■□□□□ 0.5
SHKBP1-217ENST00000598558 NPHP1O15259 732 aa18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 GTF2E1P29083 439 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 PDE6BP35913 854 aa18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 CWF19L2Q2TBE0 894 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 SLC10A5Q5PT55 438 aa18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 FAM89AQ96GI7 184 aa18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 TRMT112Q9UI30 125 aaKnown RBP18.18■□□□□ 0.5
SHKBP1-217ENST00000598558 IBTKQ9P2D0 1353 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 N4BP2Q86UW6 1770 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 H0YIN7 160 aa18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 SRGNP10124 158 aa18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 HCLS1P14317 486 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 RARSP54136 660 aaKnown RBP18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 RTL5Q5HYW3 569 aaPredicted RBP18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 PIM2Q9P1W9 311 aa18.17■□□□□ 0.5
SHKBP1-217ENST00000598558 ANKRD31Q8N7Z5 1873 aa18.16■□□□□ 0.5
SHKBP1-217ENST00000598558 ALDH1L2Q3SY69 923 aa18.16■□□□□ 0.5
SHKBP1-217ENST00000598558 DNAAF4Q8WXU2 420 aa18.16■□□□□ 0.5
SHKBP1-217ENST00000598558 BCS1LQ9Y276 419 aa18.16■□□□□ 0.5
SHKBP1-217ENST00000598558 CT47B1P0C2W7 299 aaPredicted RBP18.15■□□□□ 0.5
SHKBP1-217ENST00000598558 ZNF622Q969S3 477 aaKnown RBP eCLIP18.15■□□□□ 0.52e-8■□□□□ 10.5
SHKBP1-217ENST00000598558 NEURL1BA8MQ27 555 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 CRY2Q49AN0 593 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 BEND3Q5T5X7 828 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 SLC51AQ86UW1 340 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 CCDC191Q8NCU4 936 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 SMC4Q9NTJ3 1288 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 SH3TC1Q8TE82 1336 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 ARFGEF2Q9Y6D5 1785 aa18.14■□□□□ 0.49
SHKBP1-217ENST00000598558 TNRC6CQ9HCJ0 1690 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-217ENST00000598558 BCAR3O75815 825 aa18.13■□□□□ 0.49
SHKBP1-217ENST00000598558 DALRD3Q5D0E6 543 aaKnown RBP18.13■□□□□ 0.49
SHKBP1-217ENST00000598558 TTLL6Q8N841 843 aa18.13■□□□□ 0.49
SHKBP1-217ENST00000598558 CWC25Q9NXE8 425 aaPredicted RBP18.13■□□□□ 0.49
SHKBP1-217ENST00000598558 STYK1Q6J9G0 422 aa18.12■□□□□ 0.49
SHKBP1-217ENST00000598558 ZBTB38Q8NAP3 1195 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-217ENST00000598558 MASTLQ96GX5 879 aa18.12■□□□□ 0.49
SHKBP1-217ENST00000598558 NOB1Q9ULX3 412 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-217ENST00000598558 H7C1W4 665 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 PCCAP05165 728 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 NPR1P16066 1061 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 BRPF1P55201 1214 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 GCKRQ14397 625 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 LINS1Q8NG48 757 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 PDZRN3Q9UPQ7 1066 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 RNF123Q5XPI4 1314 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 RIC1Q4ADV7 1423 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 COL11A2P13942 1736 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 ANKRD36CQ5JPF3 1778 aa18.11■□□□□ 0.49
SHKBP1-217ENST00000598558 IRS4O14654 1257 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 HOXA10P31260 410 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 CASP7P55210 303 aa18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 NEXNQ0ZGT2 675 aa18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 C7orf43Q8WVR3 580 aa18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 NLRP3Q96P20 1036 aa18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 ZNF219Q9P2Y4 722 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 TNNQ9UQP3 1299 aa18.1■□□□□ 0.49
SHKBP1-217ENST00000598558 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
SHKBP1-217ENST00000598558 SLC4A10Q6U841 1118 aa18.09■□□□□ 0.49
SHKBP1-217ENST00000598558 OLFM4Q6UX06 510 aa18.09■□□□□ 0.49
SHKBP1-217ENST00000598558 YTHDC1Q96MU7 727 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-217ENST00000598558 GOLGB1Q14789 3259 aaKnown RBP18.08■□□□□ 0.49
SHKBP1-217ENST00000598558 PTPRCP08575 1304 aa18.08■□□□□ 0.49
SHKBP1-217ENST00000598558 C21orf2O43822 256 aa18.08■□□□□ 0.48
SHKBP1-217ENST00000598558 GRIN3BO60391 1043 aa18.08■□□□□ 0.48
SHKBP1-217ENST00000598558 PRPF40BQ6NWY9 871 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-217ENST00000598558 CNKSR1Q969H4 720 aa18.08■□□□□ 0.48
SHKBP1-217ENST00000598558 PRELPP51888 382 aa18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 SF3B3Q15393 1217 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 ARHGAP27Q6ZUM4 889 aa18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 UBE3BQ7Z3V4 1068 aa18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 BRCA1P38398 1863 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 UTRNP46939 3433 aa18.07■□□□□ 0.48
SHKBP1-217ENST00000598558 CRAMP1Q96RY5 1269 aa18.06■□□□□ 0.48
SHKBP1-217ENST00000598558 CDHR2Q9BYE9 1310 aa18.05■□□□□ 0.48
SHKBP1-217ENST00000598558 RPGRQ92834 1020 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-217ENST00000598558 RBM17Q96I25 401 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-217ENST00000598558 SRCIN1Q9C0H9 1055 aa18.05■□□□□ 0.48
SHKBP1-217ENST00000598558 ABCC4O15439 1325 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 COL4A1P02462 1669 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 PDE8AO60658 829 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 ALDH1L1O75891 902 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 ALDH1B1P30837 517 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 CCDC85AQ96PX6 553 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 SEC31BQ9NQW1 1179 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 DLEC1Q9Y238 1755 aa18.04■□□□□ 0.48
SHKBP1-217ENST00000598558 NFKBIEO00221 500 aa18.03■□□□□ 0.48
SHKBP1-217ENST00000598558 RASSF7Q02833 373 aa18.03■□□□□ 0.48
SHKBP1-217ENST00000598558 EPHA10Q5JZY3 1008 aa18.03■□□□□ 0.48
SHKBP1-217ENST00000598558 CELF1Q92879 486 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-217ENST00000598558 SLX4Q8IY92 1834 aa18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 NBPF7P0C2Y1 421 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 FOXO4P98177 505 aa18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 DDX60Q8IY21 1712 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 TTLL11Q8NHH1 800 aa18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 ARHGAP45Q92619 1136 aa18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 FRAT1Q92837 279 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 KAZALD1Q96I82 304 aa18.02■□□□□ 0.48
SHKBP1-217ENST00000598558 CACNA1FO60840 1977 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms