RNA–Protein interactions for RNA: ENST00000597724.6

SSBP4-204, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-204ENST00000597724 RIC1Q4ADV7 1423 aa21.52■■□□□ 1.04
SSBP4-204ENST00000597724 NPR1P16066 1061 aa21.51■■□□□ 1.03
SSBP4-204ENST00000597724 CNKSR1Q969H4 720 aa21.51■■□□□ 1.03
SSBP4-204ENST00000597724 RNF123Q5XPI4 1314 aa21.51■■□□□ 1.03
SSBP4-204ENST00000597724 SLC4A2P04920 1241 aa21.5■■□□□ 1.03
SSBP4-204ENST00000597724 ARFGEF2Q9Y6D5 1785 aa21.5■■□□□ 1.03
SSBP4-204ENST00000597724 ATP5J2-PTCD1G3V325 749 aa21.49■■□□□ 1.03
SSBP4-204ENST00000597724 DDX58O95786 925 aaKnown RBP21.49■■□□□ 1.03
SSBP4-204ENST00000597724 TRIM28Q13263 835 aaKnown RBP21.49■■□□□ 1.03
SSBP4-204ENST00000597724 CRY2Q49AN0 593 aa21.49■■□□□ 1.03
SSBP4-204ENST00000597724 SLC10A5Q5PT55 438 aa21.49■■□□□ 1.03
SSBP4-204ENST00000597724 TRMT112Q9UI30 125 aaKnown RBP21.49■■□□□ 1.03
SSBP4-204ENST00000597724 TNRC6CQ9HCJ0 1690 aaKnown RBP21.49■■□□□ 1.03
SSBP4-204ENST00000597724 E9PSI1 815 aa21.48■■□□□ 1.03
SSBP4-204ENST00000597724 PRPF40BQ6NWY9 871 aaKnown RBP21.48■■□□□ 1.03
SSBP4-204ENST00000597724 G2E3Q7L622 706 aa21.48■■□□□ 1.03
SSBP4-204ENST00000597724 SLFN5Q08AF3 891 aa21.47■■□□□ 1.03
SSBP4-204ENST00000597724 SYNE4Q8N205 404 aa21.47■■□□□ 1.03
SSBP4-204ENST00000597724 ZNF784Q8NCA9 323 aaPredicted RBP21.47■■□□□ 1.03
SSBP4-204ENST00000597724 SLX4Q8IY92 1834 aa21.47■■□□□ 1.03
SSBP4-204ENST00000597724 PI4KAP2A4QPH2 592 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 C21orf2O43822 256 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 ALDH1B1P30837 517 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 KSR2Q6VAB6 950 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 PI4KAP1Q8N8J0 262 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 MYD88Q99836 296 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 METTL22Q9BUU2 404 aaPredicted RBP21.46■■□□□ 1.03
SSBP4-204ENST00000597724 CACNA1FO60840 1977 aa21.46■■□□□ 1.03
SSBP4-204ENST00000597724 HOXA10P31260 410 aaPredicted RBP21.45■■□□□ 1.02
SSBP4-204ENST00000597724 C3orf67Q6ZVT6 689 aa21.45■■□□□ 1.02
SSBP4-204ENST00000597724 ZNF428Q96B54 188 aa21.45■■□□□ 1.02
SSBP4-204ENST00000597724 NLRP3Q96P20 1036 aa21.45■■□□□ 1.02
SSBP4-204ENST00000597724 ZNF219Q9P2Y4 722 aaPredicted RBP21.45■■□□□ 1.02
SSBP4-204ENST00000597724 MAP3K2Q9Y2U5 619 aa21.45■■□□□ 1.02
SSBP4-204ENST00000597724 SH3TC1Q8TE82 1336 aa21.45■■□□□ 1.02
SSBP4-204ENST00000597724 CACNA1SQ13698 1873 aa21.44■■□□□ 1.02
SSBP4-204ENST00000597724 FLIIQ13045 1269 aa21.44■■□□□ 1.02
SSBP4-204ENST00000597724 C7orf43Q8WVR3 580 aa21.44■■□□□ 1.02
SSBP4-204ENST00000597724 CDCA7LQ96GN5 454 aa21.44■■□□□ 1.02
SSBP4-204ENST00000597724 ADCY9O60503 1353 aa21.44■■□□□ 1.02
SSBP4-204ENST00000597724 HCLS1P14317 486 aaPredicted RBP21.43■■□□□ 1.02
SSBP4-204ENST00000597724 RPGRQ92834 1020 aaKnown RBP21.43■■□□□ 1.02
SSBP4-204ENST00000597724 FAM89AQ96GI7 184 aa21.43■■□□□ 1.02
SSBP4-204ENST00000597724 C9orf131Q5VYM1 1079 aa21.42■■□□□ 1.02
SSBP4-204ENST00000597724 TRMT2AQ8IZ69 625 aaKnown RBP21.42■■□□□ 1.02
SSBP4-204ENST00000597724 CCDC191Q8NCU4 936 aa21.42■■□□□ 1.02
SSBP4-204ENST00000597724 SBF1O95248 1867 aa21.41■■□□□ 1.02
SSBP4-204ENST00000597724 NFKBIEO00221 500 aa21.41■■□□□ 1.02
SSBP4-204ENST00000597724 RASSF7Q02833 373 aa21.41■■□□□ 1.02
SSBP4-204ENST00000597724 SOGA3Q5TF21 947 aa21.41■■□□□ 1.02
SSBP4-204ENST00000597724 RBM17Q96I25 401 aaKnown RBP21.41■■□□□ 1.02
SSBP4-204ENST00000597724 CRAMP1Q96RY5 1269 aa21.41■■□□□ 1.02
SSBP4-204ENST00000597724 FKBP5Q13451 457 aaPredicted RBP21.4■■□□□ 1.02
SSBP4-204ENST00000597724 ZBTB38Q8NAP3 1195 aaPredicted RBP21.4■■□□□ 1.02
SSBP4-204ENST00000597724 FER1L6Q2WGJ9 1857 aa21.39■■□□□ 1.02
SSBP4-204ENST00000597724 IGKV5-2P06315 115 aa21.39■■□□□ 1.01
SSBP4-204ENST00000597724 LMNB1P20700 586 aa21.39■■□□□ 1.01
SSBP4-204ENST00000597724 PRELPP51888 382 aa21.39■■□□□ 1.01
SSBP4-204ENST00000597724 NEXNQ0ZGT2 675 aa21.39■■□□□ 1.01
SSBP4-204ENST00000597724 RTL5Q5HYW3 569 aaPredicted RBP21.39■■□□□ 1.01
SSBP4-204ENST00000597724 CWC25Q9NXE8 425 aaPredicted RBP21.39■■□□□ 1.01
SSBP4-204ENST00000597724 RNF181Q9P0P0 153 aa21.39■■□□□ 1.01
SSBP4-204ENST00000597724 LAMB2P55268 1798 aa21.38■■□□□ 1.01
SSBP4-204ENST00000597724 PCCAP05165 728 aaPredicted RBP21.38■■□□□ 1.01
SSBP4-204ENST00000597724 DDX60Q8IY21 1712 aaKnown RBP21.38■■□□□ 1.01
SSBP4-204ENST00000597724 LTBP3Q9NS15 1303 aa21.37■■□□□ 1.01
SSBP4-204ENST00000597724 IRS4O14654 1257 aaPredicted RBP21.37■■□□□ 1.01
SSBP4-204ENST00000597724 CCDC93Q567U6 631 aa21.37■■□□□ 1.01
SSBP4-204ENST00000597724 OLFM4Q6UX06 510 aa21.37■■□□□ 1.01
SSBP4-204ENST00000597724 CWF19L2Q2TBE0 894 aaKnown RBP21.36■■□□□ 1.01
SSBP4-204ENST00000597724 DNAAF4Q8WXU2 420 aa21.36■■□□□ 1.01
SSBP4-204ENST00000597724 ABCC4O15439 1325 aa21.35■■□□□ 1.01
SSBP4-204ENST00000597724 NEURL1BA8MQ27 555 aa21.35■■□□□ 1.01
SSBP4-204ENST00000597724 SF3B3Q15393 1217 aaKnown RBP21.35■■□□□ 1.01
SSBP4-204ENST00000597724 RTKN2Q8IZC4 609 aa21.35■■□□□ 1.01
SSBP4-204ENST00000597724 TAOK3Q9H2K8 898 aa21.35■■□□□ 1.01
SSBP4-204ENST00000597724 CCDC88AQ3V6T2 1871 aa21.35■■□□□ 1.01
SSBP4-204ENST00000597724 HSP90B1P14625 803 aaKnown RBP21.34■■□□□ 1.01
SSBP4-204ENST00000597724 CC2D2BQ6DHV5 1058 aa21.34■■□□□ 1.01
SSBP4-204ENST00000597724 DDX46Q7L014 1031 aaKnown RBP21.34■■□□□ 1.01
SSBP4-204ENST00000597724 PPEF1O14829 653 aaPredicted RBP21.33■■□□□ 1.01
SSBP4-204ENST00000597724 HNRNPUQ00839 825 aaKnown RBP eCLIP21.33■■□□□ 1.01
SSBP4-204ENST00000597724 MRPL50Q8N5N7 158 aaKnown RBP21.33■■□□□ 1.01
SSBP4-204ENST00000597724 LINS1Q8NG48 757 aa21.33■■□□□ 1.01
SSBP4-204ENST00000597724 JARID2Q92833 1246 aaPredicted RBP21.33■■□□□ 1.01
SSBP4-204ENST00000597724 SNED1Q8TER0 1413 aa21.32■■□□□ 1
SSBP4-204ENST00000597724 F6X3S4 739 aa21.32■■□□□ 1
SSBP4-204ENST00000597724 BBOX1O75936 387 aa21.32■■□□□ 1
SSBP4-204ENST00000597724 FKBP4Q02790 459 aaKnown RBP eCLIP21.32■■□□□ 1
SSBP4-204ENST00000597724 ZNF526Q8TF50 670 aaPredicted RBP21.32■■□□□ 1
SSBP4-204ENST00000597724 SSH1Q8WYL5 1049 aa21.32■■□□□ 1
SSBP4-204ENST00000597724 GPBP1L1Q9HC44 474 aaPredicted RBP21.32■■□□□ 1
SSBP4-204ENST00000597724 CDHR2Q9BYE9 1310 aa21.31■■□□□ 1
SSBP4-204ENST00000597724 ZC3H4Q9UPT8 1303 aaKnown RBP21.31■■□□□ 1
SSBP4-204ENST00000597724 H7C1W4 665 aa21.31■■□□□ 1
SSBP4-204ENST00000597724 CT47B1P0C2W7 299 aaPredicted RBP21.31■■□□□ 1
SSBP4-204ENST00000597724 GRAPQ13588 217 aa21.31■■□□□ 1
SSBP4-204ENST00000597724 GCKRQ14397 625 aa21.31■■□□□ 1
SSBP4-204ENST00000597724 GRAPLQ8TC17 118 aaPredicted RBP21.31■■□□□ 1
SSBP4-204ENST00000597724 PDE8AO60658 829 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms