RNA–Protein interactions for RNA: ENST00000591914.5

SMAD4-213, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 992 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-213ENST00000591914 CCDC30Q5VVM6 783 aa35.18■■■■□ 3.22
SMAD4-213ENST00000591914 RNF181Q9P0P0 153 aa35.18■■■■□ 3.22
SMAD4-213ENST00000591914 GPBP1L1Q9HC44 474 aaPredicted RBP35.17■■■■□ 3.22
SMAD4-213ENST00000591914 ZNF219Q9P2Y4 722 aaPredicted RBP35.17■■■■□ 3.22
SMAD4-213ENST00000591914 FER1L6Q2WGJ9 1857 aa35.17■■■■□ 3.22
SMAD4-213ENST00000591914 ZNF526Q8TF50 670 aaPredicted RBP35.16■■■■□ 3.22
SMAD4-213ENST00000591914 C7orf43Q8WVR3 580 aa35.16■■■■□ 3.22
SMAD4-213ENST00000591914 FANCIQ9NVI1 1328 aa35.15■■■■□ 3.22
SMAD4-213ENST00000591914 PRELPP51888 382 aa35.15■■■■□ 3.22
SMAD4-213ENST00000591914 PHAXQ9H814 394 aaKnown RBP35.15■■■■□ 3.22
SMAD4-213ENST00000591914 LMNB1P20700 586 aa35.14■■■■□ 3.22
SMAD4-213ENST00000591914 SLC10A5Q5PT55 438 aa35.14■■■■□ 3.22
SMAD4-213ENST00000591914 SOGA3Q5TF21 947 aa35.14■■■■□ 3.22
SMAD4-213ENST00000591914 ALDH1B1P30837 517 aa35.13■■■■□ 3.21
SMAD4-213ENST00000591914 TWISTNBQ3B726 338 aaPredicted RBP35.13■■■■□ 3.21
SMAD4-213ENST00000591914 HOXA10P31260 410 aaPredicted RBP35.12■■■■□ 3.21
SMAD4-213ENST00000591914 ISCA1Q9BUE6 129 aa35.12■■■■□ 3.21
SMAD4-213ENST00000591914 LTBP3Q9NS15 1303 aa35.11■■■■□ 3.21
SMAD4-213ENST00000591914 GOLGA2Q08379 1002 aa35.11■■■■□ 3.21
SMAD4-213ENST00000591914 C3orf67Q6ZVT6 689 aa35.1■■■■□ 3.21
SMAD4-213ENST00000591914 RPGRQ92834 1020 aaKnown RBP35.09■■■■□ 3.21
SMAD4-213ENST00000591914 TRMT112Q9UI30 125 aaKnown RBP35.09■■■■□ 3.21
SMAD4-213ENST00000591914 ZC3H4Q9UPT8 1303 aaKnown RBP35.08■■■■□ 3.21
SMAD4-213ENST00000591914 CCDC88AQ3V6T2 1871 aa35.08■■■■□ 3.21
SMAD4-213ENST00000591914 RIC3Q7Z5B4 369 aa35.08■■■■□ 3.21
SMAD4-213ENST00000591914 NLRP3Q96P20 1036 aa35.08■■■■□ 3.21
SMAD4-213ENST00000591914 SPINK5Q9NQ38 1064 aaPredicted RBP35.08■■■■□ 3.21
SMAD4-213ENST00000591914 SH3TC1Q8TE82 1336 aa35.07■■■■□ 3.21
SMAD4-213ENST00000591914 TRIM28Q13263 835 aaKnown RBP35.07■■■■□ 3.2
SMAD4-213ENST00000591914 TAOK3Q9H2K8 898 aa35.07■■■■□ 3.2
SMAD4-213ENST00000591914 ATP5J2-PTCD1G3V325 749 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 CCER2I3L3R5 266 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 CCDC93Q567U6 631 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 SYNE4Q8N205 404 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 STK31Q9BXU1 1019 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 ZNF521Q96K83 1311 aa35.06■■■■□ 3.2
SMAD4-213ENST00000591914 CRAMP1Q96RY5 1269 aa35.05■■■■□ 3.2
SMAD4-213ENST00000591914 TIAM2Q8IVF5 1701 aa35.05■■■■□ 3.2
SMAD4-213ENST00000591914 LAMB2P55268 1798 aa35.05■■■■□ 3.2
SMAD4-213ENST00000591914 C1QTNF8P60827 252 aa35.04■■■■□ 3.2
SMAD4-213ENST00000591914 RBM17Q96I25 401 aaKnown RBP35.04■■■■□ 3.2
SMAD4-213ENST00000591914 DDX58O95786 925 aaKnown RBP35.03■■■■□ 3.2
SMAD4-213ENST00000591914 HCLS1P14317 486 aaPredicted RBP35.03■■■■□ 3.2
SMAD4-213ENST00000591914 MYH16Q9H6N6 1097 aa35.03■■■■□ 3.2
SMAD4-213ENST00000591914 DICER1Q9UPY3 1922 aaKnown RBP35.02■■■■□ 3.2
SMAD4-213ENST00000591914 TCERG1O14776 1098 aaKnown RBP35.02■■■■□ 3.2
SMAD4-213ENST00000591914 EXOSC9Q06265 439 aaKnown RBP35.02■■■■□ 3.2
SMAD4-213ENST00000591914 OLFM4Q6UX06 510 aa35.02■■■■□ 3.2
SMAD4-213ENST00000591914 SNED1Q8TER0 1413 aa35.01■■■■□ 3.2
SMAD4-213ENST00000591914 ZNF428Q96B54 188 aa35.01■■■■□ 3.2
SMAD4-213ENST00000591914 KIF3CO14782 793 aa35■■■■□ 3.19
SMAD4-213ENST00000591914 VAMP4O75379 141 aa35■■■■□ 3.19
SMAD4-213ENST00000591914 RTKN2Q8IZC4 609 aa35■■■■□ 3.19
SMAD4-213ENST00000591914 DDX60Q8IY21 1712 aaKnown RBP35■■■■□ 3.19
SMAD4-213ENST00000591914 FAM89AQ96GI7 184 aa34.99■■■■□ 3.19
SMAD4-213ENST00000591914 SLC4A2P04920 1241 aa34.98■■■■□ 3.19
SMAD4-213ENST00000591914 FKBP4Q02790 459 aaKnown RBP eCLIP34.98■■■■□ 3.19
SMAD4-213ENST00000591914 MYD88Q99836 296 aa34.98■■■■□ 3.19
SMAD4-213ENST00000591914 METTL22Q9BUU2 404 aaPredicted RBP34.98■■■■□ 3.19
SMAD4-213ENST00000591914 KDM2BQ8NHM5 1336 aa34.98■■■■□ 3.19
SMAD4-213ENST00000591914 CC2D2BQ6DHV5 1058 aa34.97■■■■□ 3.19
SMAD4-213ENST00000591914 KSR2Q6VAB6 950 aa34.97■■■■□ 3.19
SMAD4-213ENST00000591914 NMRK2Q9NPI5 230 aa34.97■■■■□ 3.19
SMAD4-213ENST00000591914 G2E3Q7L622 706 aa34.96■■■■□ 3.19
SMAD4-213ENST00000591914 MAP3K2Q9Y2U5 619 aa34.96■■■■□ 3.19
SMAD4-213ENST00000591914 CACNA1FO60840 1977 aa34.96■■■■□ 3.19
SMAD4-213ENST00000591914 PI4KAP2A4QPH2 592 aa34.95■■■■□ 3.19
SMAD4-213ENST00000591914 PPEF1O14829 653 aaPredicted RBP34.95■■■■□ 3.19
SMAD4-213ENST00000591914 PI4KAP1Q8N8J0 262 aa34.95■■■■□ 3.19
SMAD4-213ENST00000591914 CCDC191Q8NCU4 936 aa34.95■■■■□ 3.19
SMAD4-213ENST00000591914 ABCC4O15439 1325 aa34.95■■■■□ 3.19
SMAD4-213ENST00000591914 ZBTB38Q8NAP3 1195 aaPredicted RBP34.93■■■■□ 3.18
SMAD4-213ENST00000591914 GLTPD2A6NH11 291 aa34.92■■■■□ 3.18
SMAD4-213ENST00000591914 PSMD1Q99460 953 aa34.92■■■■□ 3.18
SMAD4-213ENST00000591914 FLIIQ13045 1269 aa34.91■■■■□ 3.18
SMAD4-213ENST00000591914 GRIPAP1Q4V328 841 aa34.91■■■■□ 3.18
SMAD4-213ENST00000591914 RTL5Q5HYW3 569 aaPredicted RBP34.91■■■■□ 3.18
SMAD4-213ENST00000591914 CWC25Q9NXE8 425 aaPredicted RBP34.91■■■■□ 3.18
SMAD4-213ENST00000591914 IRS4O14654 1257 aaPredicted RBP34.9■■■■□ 3.18
SMAD4-213ENST00000591914 SF3B3Q15393 1217 aaKnown RBP34.9■■■■□ 3.18
SMAD4-213ENST00000591914 DDX46Q7L014 1031 aaKnown RBP34.9■■■■□ 3.18
SMAD4-213ENST00000591914 SLC51AQ86UW1 340 aa34.9■■■■□ 3.18
SMAD4-213ENST00000591914 ZNF277Q9NRM2 450 aaPredicted RBP34.9■■■■□ 3.18
SMAD4-213ENST00000591914 ATP6V0A2Q9Y487 856 aa34.89■■■■□ 3.18
SMAD4-213ENST00000591914 BBOX1O75936 387 aa34.88■■■■□ 3.17
SMAD4-213ENST00000591914 PCCAP05165 728 aaPredicted RBP34.88■■■■□ 3.17
SMAD4-213ENST00000591914 IGKV5-2P06315 115 aa34.88■■■■□ 3.17
SMAD4-213ENST00000591914 GRAPQ13588 217 aa34.87■■■■□ 3.17
SMAD4-213ENST00000591914 GRAPLQ8TC17 118 aaPredicted RBP34.87■■■■□ 3.17
SMAD4-213ENST00000591914 NEXNQ0ZGT2 675 aa34.86■■■■□ 3.17
SMAD4-213ENST00000591914 RRAGCQ9HB90 399 aa34.86■■■■□ 3.17
SMAD4-213ENST00000591914 HSP90B1P14625 803 aaKnown RBP34.85■■■■□ 3.17
SMAD4-213ENST00000591914 TAF1P21675 1872 aa34.85■■■■□ 3.17
SMAD4-213ENST00000591914 IARSP41252 1262 aaKnown RBP34.85■■■■□ 3.17
SMAD4-213ENST00000591914 DPY19L2Q6NUT2 758 aa34.85■■■■□ 3.17
SMAD4-213ENST00000591914 E9PSI1 815 aa34.84■■■■□ 3.17
SMAD4-213ENST00000591914 FKBP5Q13451 457 aaPredicted RBP34.84■■■■□ 3.17
SMAD4-213ENST00000591914 DIEXFQ68CQ4 756 aaKnown RBP34.84■■■■□ 3.17
SMAD4-213ENST00000591914 TOMM70O94826 608 aa34.83■■■■□ 3.17
SMAD4-213ENST00000591914 SP8Q8IXZ3 490 aa34.83■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms