RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TRMT2AQ8IZ69 625 aaKnown RBP15.25■□□□□ 0.03
LIG3-213ENST00000590630 CDCA7LQ96GN5 454 aa15.25■□□□□ 0.03
LIG3-213ENST00000590630 ABCC12Q96J65 1359 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 SRGNP10124 158 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 HNRNPUQ00839 825 aaKnown RBP eCLIP15.24■□□□□ 0.03
LIG3-213ENST00000590630 TRIM28Q13263 835 aaKnown RBP15.24■□□□□ 0.03
LIG3-213ENST00000590630 ERFEQ4G0M1 354 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 KSR2Q6VAB6 950 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 TTLL6Q8N841 843 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 ISCA1Q9BUE6 129 aa15.24■□□□□ 0.03
LIG3-213ENST00000590630 FLIIQ13045 1269 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 STYK1Q6J9G0 422 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 MASTLQ96GX5 879 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 LAMB2P55268 1798 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 ADCY9O60503 1353 aa15.23■□□□□ 0.03
LIG3-213ENST00000590630 SLX4Q8IY92 1834 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 SH3TC1Q8TE82 1336 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 PI4KAP2A4QPH2 592 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 ATP5J2-PTCD1G3V325 749 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 NPR1P16066 1061 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 CRY2Q49AN0 593 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 G2E3Q7L622 706 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 PI4KAP1Q8N8J0 262 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 CNKSR1Q969H4 720 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 ZNF622Q969S3 477 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIG3-213ENST00000590630 METTL22Q9BUU2 404 aaPredicted RBP15.22■□□□□ 0.03
LIG3-213ENST00000590630 TRMT112Q9UI30 125 aaKnown RBP15.22■□□□□ 0.03
LIG3-213ENST00000590630 MAP3K2Q9Y2U5 619 aa15.22■□□□□ 0.03
LIG3-213ENST00000590630 DDX60Q8IY21 1712 aaKnown RBP15.22■□□□□ 0.03
LIG3-213ENST00000590630 CT47B1P0C2W7 299 aaPredicted RBP15.21■□□□□ 0.03
LIG3-213ENST00000590630 FKBP5Q13451 457 aaPredicted RBP15.21■□□□□ 0.03
LIG3-213ENST00000590630 SLC10A5Q5PT55 438 aa15.21■□□□□ 0.03
LIG3-213ENST00000590630 MYD88Q99836 296 aa15.21■□□□□ 0.03
LIG3-213ENST00000590630 NEXNQ0ZGT2 675 aa15.2■□□□□ 0.02
LIG3-213ENST00000590630 CCDC191Q8NCU4 936 aa15.2■□□□□ 0.02
LIG3-213ENST00000590630 SBF1O95248 1867 aa15.19■□□□□ 0.02
LIG3-213ENST00000590630 YY1P25490 414 aa15.19■□□□□ 0.02
LIG3-213ENST00000590630 RPGRQ92834 1020 aaKnown RBP15.19■□□□□ 0.02
LIG3-213ENST00000590630 NLRP3Q96P20 1036 aa15.19■□□□□ 0.02
LIG3-213ENST00000590630 CWC25Q9NXE8 425 aaPredicted RBP15.19■□□□□ 0.02
LIG3-213ENST00000590630 ZBED9Q6R2W3 1325 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 FER1L6Q2WGJ9 1857 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 MYH3P11055 1940 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 ALDH1B1P30837 517 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 HOXA10P31260 410 aaPredicted RBP15.18■□□□□ 0.02
LIG3-213ENST00000590630 PRPF40BQ6NWY9 871 aaKnown RBP15.18■□□□□ 0.02
LIG3-213ENST00000590630 ARHGAP27Q6ZUM4 889 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 ZBTB38Q8NAP3 1195 aaPredicted RBP15.18■□□□□ 0.02
LIG3-213ENST00000590630 DNAAF4Q8WXU2 420 aa15.18■□□□□ 0.02
LIG3-213ENST00000590630 HSP90B1P14625 803 aaKnown RBP15.17■□□□□ 0.02
LIG3-213ENST00000590630 ALDH1L2Q3SY69 923 aa15.17■□□□□ 0.02
LIG3-213ENST00000590630 SOGA3Q5TF21 947 aa15.17■□□□□ 0.02
LIG3-213ENST00000590630 SYNE4Q8N205 404 aa15.17■□□□□ 0.02
LIG3-213ENST00000590630 FAM89AQ96GI7 184 aa15.17■□□□□ 0.02
LIG3-213ENST00000590630 CCDC88AQ3V6T2 1871 aa15.16■□□□□ 0.02
LIG3-213ENST00000590630 PCCAP05165 728 aaPredicted RBP15.16■□□□□ 0.02
LIG3-213ENST00000590630 IGKV5-2P06315 115 aa15.16■□□□□ 0.02
LIG3-213ENST00000590630 HCLS1P14317 486 aaPredicted RBP15.16■□□□□ 0.02
LIG3-213ENST00000590630 C3orf67Q6ZVT6 689 aa15.16■□□□□ 0.02
LIG3-213ENST00000590630 SSH1Q8WYL5 1049 aa15.16■□□□□ 0.02
LIG3-213ENST00000590630 RBM17Q96I25 401 aaKnown RBP15.16■□□□□ 0.02
LIG3-213ENST00000590630 NEURL1BA8MQ27 555 aa15.15■□□□□ 0.02
LIG3-213ENST00000590630 IRS4O14654 1257 aaPredicted RBP15.15■□□□□ 0.02
LIG3-213ENST00000590630 C21orf2O43822 256 aa15.15■□□□□ 0.02
LIG3-213ENST00000590630 MRPL50Q8N5N7 158 aaKnown RBP15.15■□□□□ 0.02
LIG3-213ENST00000590630 LINS1Q8NG48 757 aa15.15■□□□□ 0.02
LIG3-213ENST00000590630 CRAMP1Q96RY5 1269 aa15.15■□□□□ 0.02
LIG3-213ENST00000590630 PTPRCP08575 1304 aa15.15■□□□□ 0.02
LIG3-213ENST00000590630 CWF19L2Q2TBE0 894 aaKnown RBP15.14■□□□□ 0.01
LIG3-213ENST00000590630 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
LIG3-213ENST00000590630 C7orf43Q8WVR3 580 aa15.14■□□□□ 0.01
LIG3-213ENST00000590630 SMC4Q9NTJ3 1288 aa15.14■□□□□ 0.01
LIG3-213ENST00000590630 TAF1P21675 1872 aa15.14■□□□□ 0.01
LIG3-213ENST00000590630 CDHR2Q9BYE9 1310 aa15.14■□□□□ 0.01
LIG3-213ENST00000590630 DICER1Q9UPY3 1922 aaKnown RBP15.13■□□□□ 0.01
LIG3-213ENST00000590630 F6X3S4 739 aa15.13■□□□□ 0.01
LIG3-213ENST00000590630 SF3B3Q15393 1217 aaKnown RBP15.13■□□□□ 0.01
LIG3-213ENST00000590630 GCKRQ14397 625 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 CCDC93Q567U6 631 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 BEND3Q5T5X7 828 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 DDX46Q7L014 1031 aaKnown RBP15.12■□□□□ 0.01
LIG3-213ENST00000590630 BCL2L13Q9BXK5 485 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
LIG3-213ENST00000590630 ABCC4O15439 1325 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 LTBP3Q9NS15 1303 aa15.12■□□□□ 0.01
LIG3-213ENST00000590630 NFKBIEO00221 500 aa15.11■□□□□ 0.01
LIG3-213ENST00000590630 PDE8AO60658 829 aa15.11■□□□□ 0.01
LIG3-213ENST00000590630 BRPF1P55201 1214 aaPredicted RBP15.11■□□□□ 0.01
LIG3-213ENST00000590630 CC2D2BQ6DHV5 1058 aa15.11■□□□□ 0.01
LIG3-213ENST00000590630 TIAM2Q8IVF5 1701 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 H7C1W4 665 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 PPEF1O14829 653 aaPredicted RBP15.1■□□□□ 0.01
LIG3-213ENST00000590630 BBOX1O75936 387 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 LMNB1P20700 586 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 RARSP54136 660 aaKnown RBP15.1■□□□□ 0.01
LIG3-213ENST00000590630 RASSF7Q02833 373 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 GRIPAP1Q4V328 841 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 SLC4A10Q6U841 1118 aa15.1■□□□□ 0.01
LIG3-213ENST00000590630 UBE3BQ7Z3V4 1068 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms