RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CTCFP49711 727 aaPredicted RBP13.64□□□□□ -0.23
LIG3-212ENST00000590181 PARP10Q53GL7 1025 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 CCDC93Q567U6 631 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 EAPPQ56P03 285 aaPredicted RBP13.64□□□□□ -0.23
LIG3-212ENST00000590181 CCDC146Q8IYE0 955 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 THUMPD2Q9BTF0 503 aaKnown RBP13.64□□□□□ -0.23
LIG3-212ENST00000590181 TAF1DQ9H5J8 278 aaPredicted RBP13.64□□□□□ -0.23
LIG3-212ENST00000590181 PRDM10Q9NQV6 1147 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 IFT57Q9NWB7 429 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 NIP7Q9Y221 180 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIG3-212ENST00000590181 NUP98P52948 1817 aa13.64□□□□□ -0.23
LIG3-212ENST00000590181 TMEM88BA6NKF7 163 aa13.63□□□□□ -0.23
LIG3-212ENST00000590181 GTF2E1P29083 439 aaPredicted RBP13.63□□□□□ -0.23
LIG3-212ENST00000590181 VEGFBP49765 207 aa13.63□□□□□ -0.23
LIG3-212ENST00000590181 GIGYF2Q6Y7W6 1299 aaKnown RBP13.63□□□□□ -0.23
LIG3-212ENST00000590181 PPP1R42Q7Z4L9 355 aa13.63□□□□□ -0.23
LIG3-212ENST00000590181 DDX21Q9NR30 783 aaKnown RBP eCLIP13.63□□□□□ -0.23
LIG3-212ENST00000590181 RRP7AQ9Y3A4 280 aaKnown RBP13.63□□□□□ -0.23
LIG3-212ENST00000590181 APAF1O14727 1248 aa13.62□□□□□ -0.23
LIG3-212ENST00000590181 ZNF853P0CG23 659 aa13.62□□□□□ -0.23
LIG3-212ENST00000590181 NPR1P16066 1061 aa13.62□□□□□ -0.23
LIG3-212ENST00000590181 ALDH1B1P30837 517 aa13.62□□□□□ -0.23
LIG3-212ENST00000590181 DBF4Q9UBU7 674 aaPredicted RBP13.62□□□□□ -0.23
LIG3-212ENST00000590181 PIP4K2AP48426 406 aaPredicted RBP13.61□□□□□ -0.23
LIG3-212ENST00000590181 FKBP4Q02790 459 aaKnown RBP eCLIP13.61□□□□□ -0.23
LIG3-212ENST00000590181 ZNF277Q9NRM2 450 aaPredicted RBP13.61□□□□□ -0.23
LIG3-212ENST00000590181 HYPKQ9NX55 129 aa13.61□□□□□ -0.23
LIG3-212ENST00000590181 HACL1Q9UJ83 578 aa13.61□□□□□ -0.23
LIG3-212ENST00000590181 RIC1Q4ADV7 1423 aa13.61□□□□□ -0.23
LIG3-212ENST00000590181 COL4A5P29400 1685 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 MYL6BP14649 208 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 EIF2S2P20042 333 aaKnown RBP13.6□□□□□ -0.23
LIG3-212ENST00000590181 PDIA6Q15084 440 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 ZNF34Q8IZ26 560 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 CLEC11AQ9Y240 323 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 IL16Q14005 1332 aa13.6□□□□□ -0.23
LIG3-212ENST00000590181 SNED1Q8TER0 1413 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 ITGBL1O95965 494 aaPredicted RBP13.59□□□□□ -0.23
LIG3-212ENST00000590181 HSP90B1P14625 803 aaKnown RBP13.59□□□□□ -0.23
LIG3-212ENST00000590181 EPHX2P34913 555 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 LBX1P52954 281 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 CC2D2BQ6DHV5 1058 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 OLFM4Q6UX06 510 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 C7orf43Q8WVR3 580 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 MRS2Q9HD23 443 aa13.59□□□□□ -0.23
LIG3-212ENST00000590181 LAS1LQ9Y4W2 734 aaKnown RBP13.59□□□□□ -0.23
LIG3-212ENST00000590181 RASSF10A6NK89 507 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 HSPA8P11142 646 aaKnown RBP13.58□□□□□ -0.24
LIG3-212ENST00000590181 HLFQ16534 295 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 HDGFL1Q5TGJ6 251 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 LRP10Q7Z4F1 713 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 RTKN2Q8IZC4 609 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 WBP1LQ9NX94 342 aa13.58□□□□□ -0.24
LIG3-212ENST00000590181 IARSP41252 1262 aaKnown RBP13.57□□□□□ -0.24
LIG3-212ENST00000590181 CRY2Q49AN0 593 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 SLC10A5Q5PT55 438 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 DUSP27Q5VZP5 1158 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 MAP1SQ66K74 1059 aaPredicted RBP13.57□□□□□ -0.24
LIG3-212ENST00000590181 TTLL7Q6ZT98 887 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 PLBD2Q8NHP8 589 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 MBIPQ9NS73 344 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 CACNA1FO60840 1977 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 ABCC12Q96J65 1359 aa13.57□□□□□ -0.24
LIG3-212ENST00000590181 FAM177BA6PVY3 158 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 HOXA10P31260 410 aaPredicted RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 TRIM28Q13263 835 aaKnown RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 TCIRG1Q13488 830 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 ANKRD13DQ6ZTN6 518 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 COPS6Q7L5N1 327 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 PNMA8AQ86V59 439 aaPredicted RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 WDR63Q8IWG1 891 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 ABHD8Q96I13 439 aa13.56□□□□□ -0.24
LIG3-212ENST00000590181 UTP14AQ9BVJ6 771 aaKnown RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 TMX4Q9H1E5 349 aaPredicted RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 ABT1Q9ULW3 272 aaKnown RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 WDR33Q9C0J8 1336 aaKnown RBP13.56□□□□□ -0.24
LIG3-212ENST00000590181 LAMB2P55268 1798 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 ANKRD36CQ5JPF3 1778 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 CCDC30Q5VVM6 783 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 WWC1Q8IX03 1113 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 GPC2Q8N158 579 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 RBM17Q96I25 401 aaKnown RBP13.55□□□□□ -0.24
LIG3-212ENST00000590181 NLRP3Q96P20 1036 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 CRAMP1Q96RY5 1269 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 ZBTB3Q9H5J0 574 aa13.55□□□□□ -0.24
LIG3-212ENST00000590181 FZD9O00144 591 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 DDX58O95786 925 aaKnown RBP13.54□□□□□ -0.24
LIG3-212ENST00000590181 DEFB115Q30KQ5 88 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 FAM161AQ3B820 660 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 PAXIP1Q6ZW49 1069 aaPredicted RBP13.54□□□□□ -0.24
LIG3-212ENST00000590181 CNTROBQ8N137 903 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 XAGE3Q8WTP9 111 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 VPS33BQ9H267 617 aa13.54□□□□□ -0.24
LIG3-212ENST00000590181 SLC34A2O95436 690 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 NTSR2O95665 410 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 LMOD1P29536 600 aaPredicted RBP13.53□□□□□ -0.24
LIG3-212ENST00000590181 MAP2K1Q02750 393 aaPredicted RBP13.53□□□□□ -0.24
LIG3-212ENST00000590181 SUSD4Q5VX71 490 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 TMC4Q7Z404 712 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 SYNE4Q8N205 404 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms