RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 OVOS2A0A0G2JMS6 1433 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 PI4KAP2A4QPH2 592 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 MAP3K7O43318 606 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 PPP1R42Q7Z4L9 355 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 PI4KAP1Q8N8J0 262 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 ANP32BQ92688 251 aaKnown RBP8.98□□□□□ -0.97
ZNF540-206ENST00000589117 GPATCH3Q96I76 525 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 LGR6Q9HBX8 967 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 HYPKQ9NX55 129 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 CHPF2Q9P2E5 772 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 NFAT5O94916 1531 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 NPHP4O75161 1426 aaPredicted RBP8.98□□□□□ -0.97
ZNF540-206ENST00000589117 SETD1BQ9UPS6 1966 aaKnown RBP8.98□□□□□ -0.97
ZNF540-206ENST00000589117 C19orf67A6NJJ6 358 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 RNMTO43148 476 aaKnown RBP8.98□□□□□ -0.97
ZNF540-206ENST00000589117 TBC1D12O60347 775 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 ALDH1L1O75891 902 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 CHMLP26374 656 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 NEK4P51957 841 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 ERC1Q8IUD2 1116 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 ANKRD24Q8TF21 1146 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 ANO2Q9NQ90 1003 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 C9orf78Q9NZ63 289 aaPredicted RBP8.98□□□□□ -0.97
ZNF540-206ENST00000589117 SALL3Q9BXA9 1300 aa8.98□□□□□ -0.97
ZNF540-206ENST00000589117 OS9Q13438 667 aaPredicted RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 BEND3Q5T5X7 828 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 MPRIPQ6WCQ1 1025 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 METTL3Q86U44 580 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 CNTROBQ8N137 903 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 RHPN1Q8TCX5 695 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 C19orf44Q9H6X5 657 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 DDX49Q9Y6V7 483 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 FAM208AQ9UK61 1670 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 LTN1O94822 1766 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 ZNF142P52746 1687 aaPredicted RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 BAG4O95429 457 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 XRCC6P12956 609 aaKnown RBP eCLIP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 RFC5P40937 340 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 KLHL40Q2TBA0 621 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 KIAA1211Q6ZU35 1233 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 KRT28Q7Z3Y7 464 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 CLASRPQ8N2M8 674 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 RUFY2Q8WXA3 655 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 OCEL1Q9H607 264 aa8.97□□□□□ -0.97
ZNF540-206ENST00000589117 ZNF330Q9Y3S2 320 aaPredicted RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 MARF1Q9Y4F3 1742 aaKnown RBP8.97□□□□□ -0.97
ZNF540-206ENST00000589117 PHRF1Q9P1Y6 1649 aaKnown RBP8.96□□□□□ -0.97
ZNF540-206ENST00000589117 SSFA2P28290 1259 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 KSR2Q6VAB6 950 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 RAPGEF4Q8WZA2 1011 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 ORAI2Q96SN7 254 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 GRPEL1Q9HAV7 217 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 GDPD2Q9HCC8 539 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 LIMD1Q9UGP4 676 aa8.96□□□□□ -0.97
ZNF540-206ENST00000589117 SPDYE5A6NIY4 337 aa8.96□□□□□ -0.98
ZNF540-206ENST00000589117 GIGYF1O75420 1035 aaPredicted RBP8.96□□□□□ -0.98
ZNF540-206ENST00000589117 GLRX3O76003 335 aaKnown RBP8.96□□□□□ -0.98
ZNF540-206ENST00000589117 LRRC59Q96AG4 307 aaKnown RBP8.96□□□□□ -0.98
ZNF540-206ENST00000589117 INTS4Q96HW7 963 aaKnown RBP8.96□□□□□ -0.98
ZNF540-206ENST00000589117 MTMR7Q9Y216 660 aa8.96□□□□□ -0.98
ZNF540-206ENST00000589117 TTC41PQ6P2S7 1318 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 POM121CA8CG34 1229 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 MTX1Q13505 466 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 MTMR14Q8NCE2 650 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 RGS22Q8NE09 1264 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 IL1RAPL2Q9NP60 686 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 SPG7Q9UQ90 795 aa8.95□□□□□ -0.98
ZNF540-206ENST00000589117 NBPF7P0C2Y1 421 aaPredicted RBP8.94□□□□□ -0.98
ZNF540-206ENST00000589117 ATF3P18847 181 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 CLK2P49760 499 aaKnown RBP8.94□□□□□ -0.98
ZNF540-206ENST00000589117 NEXNQ0ZGT2 675 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 MCTP1Q6DN14 999 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 PCDHGA10Q9Y5H3 936 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 MED1Q15648 1581 aaPredicted RBP8.94□□□□□ -0.98
ZNF540-206ENST00000589117 TSHZ3Q63HK5 1081 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 NUTM1Q86Y26 1132 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 LINS1Q8NG48 757 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 TRIM44Q96DX7 344 aaPredicted RBP8.94□□□□□ -0.98
ZNF540-206ENST00000589117 IL17RAQ96F46 866 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 TMX3Q96JJ7 454 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 MAP3K2Q9Y2U5 619 aa8.94□□□□□ -0.98
ZNF540-206ENST00000589117 N4BP2Q86UW6 1770 aaPredicted RBP8.94□□□□□ -0.98
ZNF540-206ENST00000589117 CYP2E1P05181 493 aaPredicted RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 IFIT2P09913 472 aaKnown RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 TATP17735 454 aaPredicted RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 FOXD4L5Q5VV16 416 aaPredicted RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 FOXD4L4Q8WXT5 416 aaPredicted RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 DDX21Q9NR30 783 aaKnown RBP eCLIP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 SLIT3O75094 1523 aa8.93□□□□□ -0.98
ZNF540-206ENST00000589117 LMO7Q8WWI1 1683 aa8.93□□□□□ -0.98
ZNF540-206ENST00000589117 HIP1O00291 1037 aa8.93□□□□□ -0.98
ZNF540-206ENST00000589117 NCLP19338 710 aaKnown RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 XPCQ01831 940 aaPredicted RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 LARP1Q6PKG0 1096 aaKnown RBP8.93□□□□□ -0.98
ZNF540-206ENST00000589117 DIAPH3Q9NSV4 1193 aa8.93□□□□□ -0.98
ZNF540-206ENST00000589117 PLEKHG2Q9H7P9 1386 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 USP42Q9H9J4 1324 aaKnown RBP8.92□□□□□ -0.98
ZNF540-206ENST00000589117 KCNQ3O43525 872 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 HSPA4P34932 840 aa8.92□□□□□ -0.98
ZNF540-206ENST00000589117 G3BP1Q13283 466 aaKnown RBP eCLIP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms