RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 RCAN3Q9UKA8 241 aa25.66■■□□□ 1.7
ATG4D-208ENST00000588667 COL11A2P13942 1736 aaPredicted RBP25.65■■□□□ 1.7
ATG4D-208ENST00000588667 ATP5J2-PTCD1G3V325 749 aa25.65■■□□□ 1.7
ATG4D-208ENST00000588667 PDE6BP35913 854 aa25.65■■□□□ 1.7
ATG4D-208ENST00000588667 ABCC12Q96J65 1359 aa25.65■■□□□ 1.7
ATG4D-208ENST00000588667 RIC1Q4ADV7 1423 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 A0A0G2JLW4 131 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 DPEP1P16444 411 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 NUTM1Q86Y26 1132 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 BCL2L13Q9BXK5 485 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 SMC4Q9NTJ3 1288 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 PDZRN3Q9UPQ7 1066 aa25.64■■□□□ 1.7
ATG4D-208ENST00000588667 NEXNQ0ZGT2 675 aa25.63■■□□□ 1.69
ATG4D-208ENST00000588667 TNRC6CQ9HCJ0 1690 aaKnown RBP25.63■■□□□ 1.69
ATG4D-208ENST00000588667 ERFEQ4G0M1 354 aa25.63■■□□□ 1.69
ATG4D-208ENST00000588667 DNAAF4Q8WXU2 420 aa25.63■■□□□ 1.69
ATG4D-208ENST00000588667 CHRNA5P30532 468 aa25.62■■□□□ 1.69
ATG4D-208ENST00000588667 CCDC191Q8NCU4 936 aa25.62■■□□□ 1.69
ATG4D-208ENST00000588667 TRMT112Q9UI30 125 aaKnown RBP25.62■■□□□ 1.69
ATG4D-208ENST00000588667 PTPRCP08575 1304 aa25.61■■□□□ 1.69
ATG4D-208ENST00000588667 RARSP54136 660 aaKnown RBP25.61■■□□□ 1.69
ATG4D-208ENST00000588667 C2CD5Q86YS7 1000 aa25.61■■□□□ 1.69
ATG4D-208ENST00000588667 UTRNP46939 3433 aa25.61■■□□□ 1.69
ATG4D-208ENST00000588667 SH3TC1Q8TE82 1336 aa25.6■■□□□ 1.69
ATG4D-208ENST00000588667 H0YIN7 160 aa25.6■■□□□ 1.69
ATG4D-208ENST00000588667 KCNA3P22001 575 aa25.6■■□□□ 1.69
ATG4D-208ENST00000588667 BRPF1P55201 1214 aaPredicted RBP25.59■■□□□ 1.69
ATG4D-208ENST00000588667 CWC25Q9NXE8 425 aaPredicted RBP25.59■■□□□ 1.69
ATG4D-208ENST00000588667 LAMB2P55268 1798 aa25.59■■□□□ 1.69
ATG4D-208ENST00000588667 KLRG2A4D1S0 409 aaPredicted RBP25.59■■□□□ 1.69
ATG4D-208ENST00000588667 DCAF8L1A6NGE4 600 aa25.59■■□□□ 1.69
ATG4D-208ENST00000588667 IGKV5-2P06315 115 aa25.59■■□□□ 1.69
ATG4D-208ENST00000588667 F6X3S4 739 aa25.58■■□□□ 1.69
ATG4D-208ENST00000588667 PIM2Q9P1W9 311 aa25.58■■□□□ 1.69
ATG4D-208ENST00000588667 ARFGEF1Q9Y6D6 1849 aa25.58■■□□□ 1.69
ATG4D-208ENST00000588667 DDX60Q8IY21 1712 aaKnown RBP25.58■■□□□ 1.68
ATG4D-208ENST00000588667 SLC10A5Q5PT55 438 aa25.57■■□□□ 1.68
ATG4D-208ENST00000588667 LINS1Q8NG48 757 aa25.57■■□□□ 1.68
ATG4D-208ENST00000588667 NEURL1BA8MQ27 555 aa25.56■■□□□ 1.68
ATG4D-208ENST00000588667 GPR162Q16538 588 aa25.56■■□□□ 1.68
ATG4D-208ENST00000588667 PELP1Q8IZL8 1130 aaKnown RBP25.56■■□□□ 1.68
ATG4D-208ENST00000588667 SRGNP10124 158 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 CWF19L2Q2TBE0 894 aaKnown RBP25.55■■□□□ 1.68
ATG4D-208ENST00000588667 ZBTB38Q8NAP3 1195 aaPredicted RBP25.55■■□□□ 1.68
ATG4D-208ENST00000588667 WWC3Q9ULE0 1092 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 KIF16BQ96L93 1317 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 CRY2Q49AN0 593 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 FAM89AQ96GI7 184 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 CACNA1SQ13698 1873 aa25.55■■□□□ 1.68
ATG4D-208ENST00000588667 PCCAP05165 728 aaPredicted RBP25.54■■□□□ 1.68
ATG4D-208ENST00000588667 YBX3P16989 372 aaKnown RBP eCLIP25.54■■□□□ 1.689e-6■□□□□ 10.4
ATG4D-208ENST00000588667 SYNE4Q8N205 404 aa25.54■■□□□ 1.68
ATG4D-208ENST00000588667 MASTLQ96GX5 879 aa25.54■■□□□ 1.68
ATG4D-208ENST00000588667 DALRD3Q5D0E6 543 aaKnown RBP25.53■■□□□ 1.68
ATG4D-208ENST00000588667 BEND3Q5T5X7 828 aa25.53■■□□□ 1.68
ATG4D-208ENST00000588667 STYK1Q6J9G0 422 aa25.53■■□□□ 1.68
ATG4D-208ENST00000588667 NLRP3Q96P20 1036 aa25.53■■□□□ 1.68
ATG4D-208ENST00000588667 HCLS1P14317 486 aaPredicted RBP25.52■■□□□ 1.68
ATG4D-208ENST00000588667 NPR1P16066 1061 aa25.52■■□□□ 1.68
ATG4D-208ENST00000588667 ZNF622Q969S3 477 aaKnown RBP eCLIP25.52■■□□□ 1.68
ATG4D-208ENST00000588667 BCS1LQ9Y276 419 aa25.52■■□□□ 1.68
ATG4D-208ENST00000588667 RTL5Q5HYW3 569 aaPredicted RBP25.52■■□□□ 1.68
ATG4D-208ENST00000588667 SLC4A10Q6U841 1118 aa25.52■■□□□ 1.68
ATG4D-208ENST00000588667 NOB1Q9ULX3 412 aaKnown RBP25.52■■□□□ 1.68
ATG4D-208ENST00000588667 HSP90B1P14625 803 aaKnown RBP25.51■■□□□ 1.67
ATG4D-208ENST00000588667 GCKRQ14397 625 aa25.51■■□□□ 1.67
ATG4D-208ENST00000588667 TTLL6Q8N841 843 aa25.51■■□□□ 1.67
ATG4D-208ENST00000588667 MYH3P11055 1940 aa25.51■■□□□ 1.67
ATG4D-208ENST00000588667 IRS4O14654 1257 aaPredicted RBP25.5■■□□□ 1.67
ATG4D-208ENST00000588667 RRP1P56182 461 aaKnown RBP25.5■■□□□ 1.67
ATG4D-208ENST00000588667 C3orf67Q6ZVT6 689 aa25.5■■□□□ 1.67
ATG4D-208ENST00000588667 CNKSR1Q969H4 720 aa25.5■■□□□ 1.67
ATG4D-208ENST00000588667 SLX4Q8IY92 1834 aa25.49■■□□□ 1.67
ATG4D-208ENST00000588667 GRIN3BO60391 1043 aa25.49■■□□□ 1.67
ATG4D-208ENST00000588667 RPGRQ92834 1020 aaKnown RBP25.49■■□□□ 1.67
ATG4D-208ENST00000588667 CDHR2Q9BYE9 1310 aa25.49■■□□□ 1.67
ATG4D-208ENST00000588667 BCAR3O75815 825 aa25.48■■□□□ 1.67
ATG4D-208ENST00000588667 ARHGAP45Q92619 1136 aa25.48■■□□□ 1.67
ATG4D-208ENST00000588667 API5Q9BZZ5 524 aaKnown RBP25.48■■□□□ 1.67
ATG4D-208ENST00000588667 SRCIN1Q9C0H9 1055 aa25.48■■□□□ 1.67
ATG4D-208ENST00000588667 ALDH1L1O75891 902 aa25.48■■□□□ 1.67
ATG4D-208ENST00000588667 ERICH6BQ5W0A0 696 aa25.48■■□□□ 1.67
ATG4D-208ENST00000588667 HOXA10P31260 410 aaPredicted RBP25.47■■□□□ 1.67
ATG4D-208ENST00000588667 H7C1W4 665 aa25.46■■□□□ 1.67
ATG4D-208ENST00000588667 IPO8O15397 1037 aaKnown RBP25.46■■□□□ 1.67
ATG4D-208ENST00000588667 UBE3BQ7Z3V4 1068 aa25.46■■□□□ 1.67
ATG4D-208ENST00000588667 CHD4Q14839 1912 aa25.45■■□□□ 1.67
ATG4D-208ENST00000588667 ALDH1B1P30837 517 aa25.45■■□□□ 1.67
ATG4D-208ENST00000588667 IRX6P78412 446 aaPredicted RBP25.45■■□□□ 1.67
ATG4D-208ENST00000588667 PRPF40BQ6NWY9 871 aaKnown RBP25.45■■□□□ 1.67
ATG4D-208ENST00000588667 JARID2Q92833 1246 aaPredicted RBP25.45■■□□□ 1.67
ATG4D-208ENST00000588667 PDE8AO60658 829 aa25.45■■□□□ 1.66
ATG4D-208ENST00000588667 SF3B3Q15393 1217 aaKnown RBP25.45■■□□□ 1.66
ATG4D-208ENST00000588667 RBM17Q96I25 401 aaKnown RBP25.45■■□□□ 1.66
ATG4D-208ENST00000588667 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-208ENST00000588667 CRAMP1Q96RY5 1269 aa25.44■■□□□ 1.66
ATG4D-208ENST00000588667 GRM8O00222 908 aa25.43■■□□□ 1.66
ATG4D-208ENST00000588667 CASP7P55210 303 aa25.43■■□□□ 1.66
ATG4D-208ENST00000588667 FRAT1Q92837 279 aaPredicted RBP25.43■■□□□ 1.66
ATG4D-208ENST00000588667 CCT4P50991 539 aaKnown RBP25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms