RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 TRIM28Q13263 835 aaKnown RBP7.35□□□□□ -1.23
VPS4B-203ENST00000588323 C8orf86Q6ZUL3 223 aa7.35□□□□□ -1.23
VPS4B-203ENST00000588323 FNBP4Q8N3X1 1017 aaPredicted RBP7.35□□□□□ -1.23
VPS4B-203ENST00000588323 SEMA6BQ9H3T3 888 aa7.35□□□□□ -1.23
VPS4B-203ENST00000588323 FAM229AH3BQW9 127 aa7.34□□□□□ -1.23
VPS4B-203ENST00000588323 COL9A3Q14050 684 aaPredicted RBP7.34□□□□□ -1.23
VPS4B-203ENST00000588323 CALR3Q96L12 384 aaKnown RBP7.34□□□□□ -1.23
VPS4B-203ENST00000588323 NACC1Q96RE7 527 aa7.34□□□□□ -1.23
VPS4B-203ENST00000588323 UBE2OQ9C0C9 1292 aaKnown RBP7.34□□□□□ -1.23
VPS4B-203ENST00000588323 IGFLR1Q9H665 355 aa7.34□□□□□ -1.23
VPS4B-203ENST00000588323 LILRB5O75023 590 aa7.33□□□□□ -1.24
VPS4B-203ENST00000588323 RTN1Q16799 776 aa7.33□□□□□ -1.24
VPS4B-203ENST00000588323 EFCC1Q9HA90 598 aa7.33□□□□□ -1.24
VPS4B-203ENST00000588323 NID1P14543 1247 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 DPYDQ12882 1025 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 TMEM132AQ24JP5 1023 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 CRTC2Q53ET0 693 aaPredicted RBP7.32□□□□□ -1.24
VPS4B-203ENST00000588323 TRAPPC3LQ5T215 181 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 IER5Q5VY09 327 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 C20orf204Q6ZNR8 217 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 Q8N3U1 123 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 PNMA5Q96PV4 448 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 PPP1R12CQ9BZL4 782 aa7.32□□□□□ -1.24
VPS4B-203ENST00000588323 IGFBP4P22692 258 aa7.31□□□□□ -1.24
VPS4B-203ENST00000588323 PTK7Q13308 1070 aa7.31□□□□□ -1.24
VPS4B-203ENST00000588323 SLC6A14Q9UN76 642 aa7.31□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L15C9J2P7 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L10C9JJH3 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L13C9JLJ4 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L12C9JPN9 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L11C9JVI0 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L21D6R901 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L18D6R9N7 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L22D6RA61 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L17D6RBQ6 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L19D6RCP7 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L20D6RJB6 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 TGFBR3LH3BV60 316 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 LGR5O75473 907 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 EPB42P16452 691 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 USP17L24Q0WX57 530 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 CCINQ13939 588 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 GRIK4Q16099 956 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 ANKMY2Q8IV38 441 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 GSX2Q9BZM3 304 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 VRTNQ9H8Y1 702 aa7.3□□□□□ -1.24
VPS4B-203ENST00000588323 JPH1Q9HDC5 661 aaPredicted RBP7.3□□□□□ -1.24
VPS4B-203ENST00000588323 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.3□□□□□ -1.24
VPS4B-203ENST00000588323 FAM196BA6NMK8 535 aa7.29□□□□□ -1.24
VPS4B-203ENST00000588323 LMOD1P29536 600 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-203ENST00000588323 KANK4Q5T7N3 995 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-203ENST00000588323 TPSG1Q9NRR2 321 aa7.29□□□□□ -1.24
VPS4B-203ENST00000588323 DNAJB12Q9NXW2 375 aaKnown RBP7.29□□□□□ -1.24
VPS4B-203ENST00000588323 NFKB1P19838 968 aa7.28□□□□□ -1.24
VPS4B-203ENST00000588323 ITGB7P26010 798 aa7.28□□□□□ -1.24
VPS4B-203ENST00000588323 RSPO4Q2I0M5 234 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-203ENST00000588323 NUDT8Q8WV74 236 aa7.28□□□□□ -1.24
VPS4B-203ENST00000588323 BCS1LQ9Y276 419 aa7.28□□□□□ -1.24
VPS4B-203ENST00000588323 A0A0A0MRY4 1105 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 A6NJR5 290 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 C9orf172C9J069 976 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 RAC1P63000 192 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 ZMYM1Q5SVZ6 1142 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 PSAPL1Q6NUJ1 521 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 VTI1AQ96AJ9 217 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 KLK14Q9P0G3 267 aa7.27□□□□□ -1.25
VPS4B-203ENST00000588323 RGS9O75916 674 aaPredicted RBP7.26□□□□□ -1.25
VPS4B-203ENST00000588323 ELNP15502 786 aa7.26□□□□□ -1.25
VPS4B-203ENST00000588323 IDH3AP50213 366 aa7.26□□□□□ -1.25
VPS4B-203ENST00000588323 PCSK7Q16549 785 aa7.26□□□□□ -1.25
VPS4B-203ENST00000588323 NKAPLQ5M9Q1 402 aa7.26□□□□□ -1.25
VPS4B-203ENST00000588323 DMGDHQ9UI17 866 aaKnown RBP7.26□□□□□ -1.25
VPS4B-203ENST00000588323 FOXO3O43524 673 aa7.25□□□□□ -1.25
VPS4B-203ENST00000588323 DYRK3O43781 588 aa7.25□□□□□ -1.25
VPS4B-203ENST00000588323 AFF1P51825 1210 aaKnown RBP7.25□□□□□ -1.25
VPS4B-203ENST00000588323 DGKZQ13574 1117 aa7.25□□□□□ -1.25
VPS4B-203ENST00000588323 NAGPAQ9UK23 515 aa7.25□□□□□ -1.25
VPS4B-203ENST00000588323 INPP5BP32019 993 aa7.24□□□□□ -1.25
VPS4B-203ENST00000588323 ARSDP51689 593 aa7.24□□□□□ -1.25
VPS4B-203ENST00000588323 KRT25Q7Z3Z0 450 aa7.24□□□□□ -1.25
VPS4B-203ENST00000588323 FAM35AQ86V20 835 aa7.24□□□□□ -1.25
VPS4B-203ENST00000588323 MAP3K6O95382 1288 aa7.23□□□□□ -1.25
VPS4B-203ENST00000588323 SELPP16109 830 aa7.23□□□□□ -1.25
VPS4B-203ENST00000588323 GRNP28799 593 aaKnown RBP7.23□□□□□ -1.25
VPS4B-203ENST00000588323 NRG1Q02297 640 aaPredicted RBP7.23□□□□□ -1.25
VPS4B-203ENST00000588323 ADGRE1Q14246 886 aa7.23□□□□□ -1.25
VPS4B-203ENST00000588323 MBTPS1Q14703 1052 aa7.23□□□□□ -1.25
VPS4B-203ENST00000588323 DMRTC2Q8IXT2 367 aaPredicted RBP7.23□□□□□ -1.25
VPS4B-203ENST00000588323 ARXQ96QS3 562 aa7.23□□□□□ -1.25
VPS4B-203ENST00000588323 QTRT2Q9H974 415 aaKnown RBP7.23□□□□□ -1.25
VPS4B-203ENST00000588323 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS4B-203ENST00000588323 MICAL2O94851 1124 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 RARAP10276 462 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 CPB1P15086 417 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 WEE1P30291 646 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 C11orf91Q3C1V1 193 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 FMR1NBQ8N0W7 255 aaPredicted RBP7.22□□□□□ -1.25
VPS4B-203ENST00000588323 FAM200AQ8TCP9 573 aa7.22□□□□□ -1.25
VPS4B-203ENST00000588323 LENG1Q96BZ8 264 aaPredicted RBP7.22□□□□□ -1.25
VPS4B-203ENST00000588323 USP21Q9UK80 565 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms