RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 NEXNQ0ZGT2 675 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 ANKRD45Q5TZF3 282 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 C10orf71Q711Q0 1435 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 LINS1Q8NG48 757 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 KIAA1551Q9HCM1 1747 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 BCS1LQ9Y276 419 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 USP16Q9Y5T5 823 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 PARP3Q9Y6F1 533 aa12.92□□□□□ -0.34
LIG3-203ENST00000585370 N4BP2Q86UW6 1770 aaPredicted RBP12.92□□□□□ -0.34
LIG3-203ENST00000585370 PRAMEF22A3QJZ6 481 aa12.91□□□□□ -0.34
LIG3-203ENST00000585370 ANKRD13DQ6ZTN6 518 aa12.91□□□□□ -0.34
LIG3-203ENST00000585370 DNAJC10Q8IXB1 793 aa12.91□□□□□ -0.34
LIG3-203ENST00000585370 MAP3K2Q9Y2U5 619 aa12.91□□□□□ -0.34
LIG3-203ENST00000585370 C4AP0C0L4 1744 aa12.91□□□□□ -0.34
LIG3-203ENST00000585370 USP42Q9H9J4 1324 aaKnown RBP12.9□□□□□ -0.34
LIG3-203ENST00000585370 EIF5BO60841 1220 aaKnown RBP12.9□□□□□ -0.34
LIG3-203ENST00000585370 DDR1Q08345 913 aa12.9□□□□□ -0.34
LIG3-203ENST00000585370 PROSER3Q2NL68 480 aa12.9□□□□□ -0.34
LIG3-203ENST00000585370 RIC3Q7Z5B4 369 aa12.9□□□□□ -0.34
LIG3-203ENST00000585370 TJP1Q07157 1748 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 KIF3CO14782 793 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 ANXA1P04083 346 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 TM4SF1P30408 202 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 C8orf34Q49A92 452 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 ARHGAP27Q6ZUM4 889 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 COPS6Q7L5N1 327 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 SKAP1Q86WV1 359 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 XAGE3Q8WTP9 111 aa12.89□□□□□ -0.35
LIG3-203ENST00000585370 METTL22Q9BUU2 404 aaPredicted RBP12.89□□□□□ -0.35
LIG3-203ENST00000585370 C9orf78Q9NZ63 289 aaPredicted RBP12.89□□□□□ -0.35
LIG3-203ENST00000585370 STARD3NLO95772 234 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 CYP19A1P11511 503 aaPredicted RBP12.88□□□□□ -0.35
LIG3-203ENST00000585370 ANP32AP39687 249 aaKnown RBP12.88□□□□□ -0.35
LIG3-203ENST00000585370 HSP90AB4PQ58FF6 505 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 LRP10Q7Z4F1 713 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 PLBD2Q8NHP8 589 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 LNPKQ9C0E8 428 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 UTYO14607 1347 aa12.88□□□□□ -0.35
LIG3-203ENST00000585370 POLRMTO00411 1230 aaKnown RBP12.87□□□□□ -0.35
LIG3-203ENST00000585370 RAB11FIP3O75154 756 aa12.87□□□□□ -0.35
LIG3-203ENST00000585370 MYL6BP14649 208 aa12.87□□□□□ -0.35
LIG3-203ENST00000585370 AIMP1Q12904 312 aaKnown RBP12.87□□□□□ -0.35
LIG3-203ENST00000585370 USPL1Q5W0Q7 1092 aa12.87□□□□□ -0.35
LIG3-203ENST00000585370 SSH3Q8TE77 659 aa12.87□□□□□ -0.35
LIG3-203ENST00000585370 LRRFIP2Q9Y608 721 aaKnown RBP12.87□□□□□ -0.35
LIG3-203ENST00000585370 BRCA1P38398 1863 aaKnown RBP12.87□□□□□ -0.35
LIG3-203ENST00000585370 ZPR1O75312 459 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 HSPA6P17066 643 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 CHRNA5P30532 468 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 MTX1Q13505 466 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 POLA2Q14181 598 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 PIM2Q9P1W9 311 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 KCPQ6ZWJ8 1503 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 UBR2Q8IWV8 1755 aa12.86□□□□□ -0.35
LIG3-203ENST00000585370 GRM8O00222 908 aa12.85□□□□□ -0.35
LIG3-203ENST00000585370 BMP2KLQ5H9B9 411 aa12.85□□□□□ -0.35
LIG3-203ENST00000585370 NARFQ9UHQ1 456 aa12.85□□□□□ -0.35
LIG3-203ENST00000585370 ZBTB1Q9Y2K1 713 aa12.85□□□□□ -0.35
LIG3-203ENST00000585370 LAMB4A4D0S4 1761 aa12.84□□□□□ -0.35
LIG3-203ENST00000585370 NEURL1BA8MQ27 555 aa12.84□□□□□ -0.35
LIG3-203ENST00000585370 NBPF7P0C2Y1 421 aaPredicted RBP12.84□□□□□ -0.35
LIG3-203ENST00000585370 GCKRQ14397 625 aa12.84□□□□□ -0.35
LIG3-203ENST00000585370 NFIXQ14938 502 aa12.84□□□□□ -0.35
LIG3-203ENST00000585370 DALRD3Q5D0E6 543 aaKnown RBP12.84□□□□□ -0.35
LIG3-203ENST00000585370 UPF2Q9HAU5 1272 aaKnown RBP12.84□□□□□ -0.35
LIG3-203ENST00000585370 BCL2L12Q9HB09 334 aa12.84□□□□□ -0.35
LIG3-203ENST00000585370 PCNTO95613 3336 aa12.83□□□□□ -0.35
LIG3-203ENST00000585370 COL15A1P39059 1388 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 NBPF26B4DH59 902 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 IGKV5-2P06315 115 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 C9orf131Q5VYM1 1079 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 NBPF10Q6P3W6 841 aaKnown RBP12.83□□□□□ -0.36
LIG3-203ENST00000585370 PPP1R42Q7Z4L9 355 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 NBPF15Q8N660 670 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 MYD88Q99836 296 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 LRRCC1Q9C099 1032 aa12.83□□□□□ -0.36
LIG3-203ENST00000585370 PNMA6EA0A0J9YXQ4 647 aa12.82□□□□□ -0.36
LIG3-203ENST00000585370 A1BGP04217 495 aa12.82□□□□□ -0.36
LIG3-203ENST00000585370 PLEKHM2Q8IWE5 1019 aa12.82□□□□□ -0.36
LIG3-203ENST00000585370 OSBPL3Q9H4L5 887 aa12.82□□□□□ -0.36
LIG3-203ENST00000585370 NMRK2Q9NPI5 230 aa12.82□□□□□ -0.36
LIG3-203ENST00000585370 NOP58Q9Y2X3 529 aaKnown RBP12.82□□□□□ -0.36
LIG3-203ENST00000585370 ARFGEF1Q9Y6D6 1849 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 SRGAP3O43295 1099 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 TOMM70O94826 608 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 EIF5P55010 431 aaKnown RBP12.81□□□□□ -0.36
LIG3-203ENST00000585370 CWF19L2Q2TBE0 894 aaKnown RBP12.81□□□□□ -0.36
LIG3-203ENST00000585370 ERC1Q8IUD2 1116 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 CCDC191Q8NCU4 936 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 DDRGK1Q96HY6 314 aa12.81□□□□□ -0.36
LIG3-203ENST00000585370 SURF6O75683 361 aaKnown RBP12.8□□□□□ -0.36
LIG3-203ENST00000585370 SERPINB2P05120 415 aa12.8□□□□□ -0.36
LIG3-203ENST00000585370 TRIM28Q13263 835 aaKnown RBP12.8□□□□□ -0.36
LIG3-203ENST00000585370 HSP90AB3PQ58FF7 597 aa12.8□□□□□ -0.36
LIG3-203ENST00000585370 NPM2Q86SE8 214 aaKnown RBP12.8□□□□□ -0.36
LIG3-203ENST00000585370 KIF1BPQ96EK5 621 aa12.8□□□□□ -0.36
LIG3-203ENST00000585370 AFDNP55196 1824 aaKnown RBP12.79□□□□□ -0.36
LIG3-203ENST00000585370 KIF6Q6ZMV9 814 aa12.79□□□□□ -0.36
LIG3-203ENST00000585370 IPO9Q96P70 1041 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms