RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	CLEC11A	Q9Y240	323 aa		11.7	□□□□□ -0.54
NUP85-223	ENST00000583877	CASP8AP2	Q9UKL3	1982 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	PRAMEF22	A3QJZ6	481 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	RASSF10	A6NK89	507 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	PRKAR2B	P31323	418 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	IARS	P41252	1262 aa	Known RBP	11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	DEFB115	Q30KQ5	88 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	OLFM4	Q6UX06	510 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	CNTROB	Q8N137	903 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	GPC2	Q8N158	579 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	RSPH6A	Q9H0K4	717 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	SNED1	Q8TER0	1413 aa		11.69	□□□□□ -0.54
NUP85-223	ENST00000583877	POLR2A	P24928	1970 aa	Known RBP	11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	TNRC18	O15417	2968 aa	Predicted RBP	11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	RNF123	Q5XPI4	1314 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	NBPF26	B4DH59	902 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	LBX1	P52954	281 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	NBPF10	Q6P3W6	841 aa	Known RBP	11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	SYNE4	Q8N205	404 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	NBPF15	Q8N660	670 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	PSMD1	Q99460	953 aa		11.68	□□□□□ -0.54
NUP85-223	ENST00000583877	LAMB2	P55268	1798 aa		11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	ANKRD36C	Q5JPF3	1778 aa		11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	WDR33	Q9C0J8	1336 aa	Known RBP	11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	PLCB2	Q00722	1185 aa		11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	MAP2K1	Q02750	393 aa	Predicted RBP	11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	MAP1S	Q66K74	1059 aa	Predicted RBP	11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	RTF1	Q92541	710 aa	Known RBP	11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	CFAP53	Q96M91	514 aa		11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	COL4A5	P29400	1685 aa		11.67	□□□□□ -0.54
NUP85-223	ENST00000583877	FAM177B	A6PVY3	158 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	HSPA8	P11142	646 aa	Known RBP	11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	GTF2E1	P29083	439 aa	Predicted RBP	11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	CRY2	Q49AN0	593 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	CC2D2B	Q6DHV5	1058 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	MCM10	Q7L590	875 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	CCER1	Q8TC90	406 aa	Predicted RBP	11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	JDP2	Q8WYK2	163 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	NYX	Q9GZU5	481 aa		11.66	□□□□□ -0.54
NUP85-223	ENST00000583877	HTATSF1	O43719	755 aa	Known RBP	11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	EIF6	P56537	245 aa	Known RBP	11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	HLF	Q16534	295 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	GRIPAP1	Q4V328	841 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	ABT1	Q9ULW3	272 aa	Known RBP	11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	NUDC	Q9Y266	331 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	RIC1	Q4ADV7	1423 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	TAF1	P21675	1872 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	PDE4DIP	Q5VU43	2346 aa		11.65	□□□□□ -0.54
NUP85-223	ENST00000583877	LMOD1	P29536	600 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP85-223	ENST00000583877	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
NUP85-223	ENST00000583877	ABCC12	Q96J65	1359 aa		11.64	□□□□□ -0.55
NUP85-223	ENST00000583877	AKAP11	Q9UKA4	1901 aa		11.64	□□□□□ -0.55
NUP85-223	ENST00000583877	ERVV-1	B6SEH8	477 aa		11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	HOXA10	P31260	410 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	DCTN1	Q14203	1278 aa		11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	TAF7	Q15545	349 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	ABHD8	Q96I13	439 aa		11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	GJA3	Q9Y6H8	435 aa		11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.63	□□□□□ -0.55
NUP85-223	ENST00000583877	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	ECE1	P42892	770 aa		11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	SCNN1D	P51172	638 aa		11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	USP50	Q70EL3	339 aa	Predicted RBP	11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	NUTM1	Q86Y26	1132 aa		11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	RPGR	Q92834	1020 aa	Known RBP	11.62	□□□□□ -0.55
NUP85-223	ENST00000583877	MAP3K15	Q6ZN16	1313 aa		11.61	□□□□□ -0.55
NUP85-223	ENST00000583877	EPS15	P42566	896 aa		11.61	□□□□□ -0.55
NUP85-223	ENST00000583877	KIF6	Q6ZMV9	814 aa		11.61	□□□□□ -0.55
NUP85-223	ENST00000583877	LARGE2	Q8N3Y3	721 aa		11.61	□□□□□ -0.55
NUP85-223	ENST00000583877	CAPNS2	Q96L46	248 aa		11.61	□□□□□ -0.55
NUP85-223	ENST00000583877	ECM2	O94769	699 aa	Predicted RBP	11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	CST9	Q5W186	159 aa		11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	PNISR	Q8TF01	805 aa	Known RBP	11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	RBM17	Q96I25	401 aa	Known RBP	11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	GPR101	Q96P66	508 aa	Predicted RBP	11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	CRAMP1	Q96RY5	1269 aa		11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	BEGAIN	Q9BUH8	593 aa		11.6	□□□□□ -0.55
NUP85-223	ENST00000583877	PPEF1	O14829	653 aa	Predicted RBP	11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	SLC34A2	O95436	690 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	PPP2R1A	P30153	589 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	FMR1	Q06787	632 aa	Known RBP eCLIP	11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	FAM161A	Q3B820	660 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	CYP4F22	Q6NT55	531 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	TTLL7	Q6ZT98	887 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	NGEF	Q8N5V2	710 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	VPS33B	Q9H267	617 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	MIS18A	Q9NYP9	233 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	TLL2	Q9Y6L7	1015 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	UBN2	Q6ZU65	1347 aa		11.59	□□□□□ -0.55
NUP85-223	ENST00000583877	TRAF5	O00463	557 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	GPT	P24298	496 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	MAP2K2	P36507	400 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	SUSD4	Q5VX71	490 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	NIM1K	Q8IY84	436 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	ZNF34	Q8IZ26	560 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	ADARB2	Q9NS39	739 aa	Known RBP	11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	GPRC5D	Q9NZD1	345 aa		11.58	□□□□□ -0.56
NUP85-223	ENST00000583877	RRP7A	Q9Y3A4	280 aa	Known RBP	11.58	□□□□□ -0.56

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