RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	HINFP	Q9BQA5	517 aa		7.58	□□□□□ -1.2
SS18-223	ENST00000583595	GGA1	Q9UJY5	639 aa		7.58	□□□□□ -1.2
SS18-223	ENST00000583595	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	7.58	□□□□□ -1.2
SS18-223	ENST00000583595	ATAD2	Q6PL18	1390 aa		7.58	□□□□□ -1.2
SS18-223	ENST00000583595	CNTNAP5	Q8WYK1	1306 aa		7.57	□□□□□ -1.2
SS18-223	ENST00000583595	SHISA8	B8ZZ34	492 aa		7.57	□□□□□ -1.2
SS18-223	ENST00000583595	HIRA	P54198	1017 aa	Predicted RBP	7.57	□□□□□ -1.2
SS18-223	ENST00000583595	C1orf53	Q5VUE5	145 aa		7.57	□□□□□ -1.2
SS18-223	ENST00000583595	POTEA	Q6S8J7	498 aa		7.57	□□□□□ -1.2
SS18-223	ENST00000583595	BEND7	Q8N7W2	519 aa	Predicted RBP	7.57	□□□□□ -1.2
SS18-223	ENST00000583595	EDARADD	Q8WWZ3	215 aa		7.57	□□□□□ -1.2
SS18-223	ENST00000583595	SCG3	Q8WXD2	468 aa	Known RBP	7.57	□□□□□ -1.2
SS18-223	ENST00000583595	GPC6	Q9Y625	555 aa	Predicted RBP	7.57	□□□□□ -1.2
SS18-223	ENST00000583595	LGR5	O75473	907 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	ARAF	P10398	606 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	FAM182B	Q5T319	152 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	PODN	Q7Z5L7	613 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	CHMP7	Q8WUX9	453 aa	Predicted RBP	7.56	□□□□□ -1.2
SS18-223	ENST00000583595	PUS7	Q96PZ0	661 aa	Known RBP	7.56	□□□□□ -1.2
SS18-223	ENST00000583595	PHACTR1	Q9C0D0	580 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	MARK1	Q9P0L2	795 aa		7.56	□□□□□ -1.2
SS18-223	ENST00000583595	NEURL1B	A8MQ27	555 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	EFS	O43281	561 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	KANK3	Q6NY19	840 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	SLCO4C1	Q6ZQN7	724 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	NPAS4	Q8IUM7	802 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	GAS2L2	Q8NHY3	880 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	ANO2	Q9NQ90	1003 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	STRN4	Q9NRL3	753 aa		7.55	□□□□□ -1.2
SS18-223	ENST00000583595	PHF20L1	A8MW92	1017 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	ABL1	P00519	1130 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	TCF3	P15923	654 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	LAMC2	Q13753	1193 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	ALDH16A1	Q8IZ83	802 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	FAM177A1	Q8N128	213 aa	Predicted RBP	7.54	□□□□□ -1.2
SS18-223	ENST00000583595	STAG2	Q8N3U4	1231 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	C2orf49	Q9BVC5	232 aa	Predicted RBP	7.54	□□□□□ -1.2
SS18-223	ENST00000583595	RRAGC	Q9HB90	399 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	ANKIB1	Q9P2G1	1089 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	PRR12	Q9ULL5	1215 aa		7.54	□□□□□ -1.2
SS18-223	ENST00000583595	PRMT3	O60678	531 aa		7.53	□□□□□ -1.2
SS18-223	ENST00000583595	HMGB1	P09429	215 aa	Known RBP	7.53	□□□□□ -1.2
SS18-223	ENST00000583595	HSP90B1	P14625	803 aa	Known RBP	7.53	□□□□□ -1.2
SS18-223	ENST00000583595	ADH6	P28332	368 aa		7.53	□□□□□ -1.2
SS18-223	ENST00000583595	SNRPN	P63162	240 aa	Known RBP	7.53	□□□□□ -1.2
SS18-223	ENST00000583595	HSH2D	Q96JZ2	352 aa		7.53	□□□□□ -1.2
SS18-223	ENST00000583595	PRIMPOL	Q96LW4	560 aa		7.53	□□□□□ -1.2
SS18-223	ENST00000583595	KLF15	Q9UIH9	416 aa		7.53	□□□□□ -1.2
SS18-223	ENST00000583595	EPX	P11678	715 aa		7.52	□□□□□ -1.21
SS18-223	ENST00000583595	AMPD1	P23109	780 aa		7.52	□□□□□ -1.21
SS18-223	ENST00000583595	PCBP4	P57723	403 aa	Known RBP	7.52	□□□□□ -1.21
SS18-223	ENST00000583595	SFSWAP	Q12872	951 aa	Known RBP	7.52	□□□□□ -1.21
SS18-223	ENST00000583595	ZNF326	Q5BKZ1	582 aa	Known RBP	7.52	□□□□□ -1.21
SS18-223	ENST00000583595	ZNF280C	Q8ND82	737 aa		7.52	□□□□□ -1.21
SS18-223	ENST00000583595	NGLY1	Q96IV0	654 aa		7.52	□□□□□ -1.21
SS18-223	ENST00000583595	SUSD3	Q96L08	255 aa		7.52	□□□□□ -1.21
SS18-223	ENST00000583595	AVEN	Q9NQS1	362 aa	Predicted RBP	7.52	□□□□□ -1.21
SS18-223	ENST00000583595	IGFBP4	P22692	258 aa		7.51	□□□□□ -1.21
SS18-223	ENST00000583595	GRIN2C	Q14957	1233 aa		7.51	□□□□□ -1.21
SS18-223	ENST00000583595	SWI5	Q1ZZU3	235 aa		7.51	□□□□□ -1.21
SS18-223	ENST00000583595	ZNF468	Q5VIY5	522 aa	Predicted RBP	7.51	□□□□□ -1.21
SS18-223	ENST00000583595	BTBD6	Q96KE9	485 aa		7.51	□□□□□ -1.21
SS18-223	ENST00000583595	CEP63	Q96MT8	703 aa		7.51	□□□□□ -1.21
SS18-223	ENST00000583595	ZNF211	Q13398	564 aa	Predicted RBP	7.5	□□□□□ -1.21
SS18-223	ENST00000583595	FCHSD1	Q86WN1	690 aa		7.5	□□□□□ -1.21
SS18-223	ENST00000583595	MKL2	Q9ULH7	1088 aa		7.5	□□□□□ -1.21
SS18-223	ENST00000583595	DRC1	Q96MC2	740 aa		7.49	□□□□□ -1.21
SS18-223	ENST00000583595	SLC30A3	Q99726	388 aa		7.49	□□□□□ -1.21
SS18-223	ENST00000583595	BRD7	Q9NPI1	651 aa		7.49	□□□□□ -1.21
SS18-223	ENST00000583595		H3BRB1	525 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	ICMT	O60725	284 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	HOXB4	P17483	251 aa	Predicted RBP	7.48	□□□□□ -1.21
SS18-223	ENST00000583595	WEE1	P30291	646 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	TYRO3	Q06418	890 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	ECM1	Q16610	540 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	CHSY3	Q70JA7	882 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	FBXO33	Q7Z6M2	555 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	SYT9	Q86SS6	491 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	DCAF5	Q96JK2	942 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	TUT1	Q9H6E5	874 aa	Known RBP	7.48	□□□□□ -1.21
SS18-223	ENST00000583595	KCNH4	Q9UQ05	1017 aa		7.48	□□□□□ -1.21
SS18-223	ENST00000583595	CDK11B	P21127	795 aa	Known RBP	7.47	□□□□□ -1.21
SS18-223	ENST00000583595	MAPK1	P28482	360 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	SPEM2	Q0P670	501 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	OCLN	Q16625	522 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	HIF1A	Q16665	826 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	RTN1	Q16799	776 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	LINC00114	Q6XXX2	140 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	BTLA	Q7Z6A9	289 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	CXXC1	Q9P0U4	656 aa	Predicted RBP	7.47	□□□□□ -1.21
SS18-223	ENST00000583595	PPP1R1B	Q9UD71	204 aa	Predicted RBP	7.47	□□□□□ -1.21
SS18-223	ENST00000583595	SEPT3	Q9UH03	358 aa		7.47	□□□□□ -1.21
SS18-223	ENST00000583595	CDK11A	Q9UQ88	783 aa	Predicted RBP	7.47	□□□□□ -1.21
SS18-223	ENST00000583595	VAMP1	P23763	118 aa		7.46	□□□□□ -1.22
SS18-223	ENST00000583595	KCNQ4	P56696	695 aa		7.46	□□□□□ -1.22
SS18-223	ENST00000583595	CAPN12	Q6ZSI9	719 aa		7.46	□□□□□ -1.22
SS18-223	ENST00000583595	EGFL7	Q9UHF1	273 aa		7.46	□□□□□ -1.22
SS18-223	ENST00000583595	FOXO3	O43524	673 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	SIN3B	O75182	1162 aa		7.45	□□□□□ -1.22
SS18-223	ENST00000583595	DGKG	P49619	791 aa		7.45	□□□□□ -1.22

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