RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ADGRE2Q9UHX3 823 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 ZNF232Q9UNY5 417 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 NDUFB9Q9Y6M9 179 aa8.22□□□□□ -1.09
SMCHD1-209ENST00000583441 SOCS7O14512 581 aa8.21□□□□□ -1.1
SMCHD1-209ENST00000583441 SFI1A8K8P3 1242 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 ALX3O95076 343 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 TEAD4Q15561 434 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 WFDC8Q8IUA0 241 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 KDM4CQ9H3R0 1056 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 ANKIB1Q9P2G1 1089 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 STOML1Q9UBI4 398 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 NAGPAQ9UK23 515 aa8.2□□□□□ -1.1
SMCHD1-209ENST00000583441 BACH1O14867 736 aa8.19□□□□□ -1.1
SMCHD1-209ENST00000583441 GPR37L1O60883 481 aa8.19□□□□□ -1.1
SMCHD1-209ENST00000583441 C7orf43Q8WVR3 580 aa8.19□□□□□ -1.1
SMCHD1-209ENST00000583441 EIF4G2P78344 907 aaKnown RBP eCLIP8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 DTX1Q86Y01 620 aa8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 POU5F2Q8N7G0 328 aa8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 PCMTD1Q96MG8 357 aaPredicted RBP8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 EFCC1Q9HA90 598 aa8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 SCHIP1Q9P0W5 487 aaPredicted RBP8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 CHIC2Q9UKJ5 165 aa8.18□□□□□ -1.1
SMCHD1-209ENST00000583441 ZDHHC13Q8IUH4 622 aa8.17□□□□□ -1.1
SMCHD1-209ENST00000583441 MAP7D1Q3KQU3 841 aa8.16□□□□□ -1.1
SMCHD1-209ENST00000583441 FAM35AQ86V20 835 aa8.16□□□□□ -1.1
SMCHD1-209ENST00000583441 TMEM130Q8N3G9 435 aa8.16□□□□□ -1.1
SMCHD1-209ENST00000583441 MRPL18Q9H0U6 180 aaKnown RBP8.16□□□□□ -1.1
SMCHD1-209ENST00000583441 GPBP1L1Q9HC44 474 aaPredicted RBP8.16□□□□□ -1.1
SMCHD1-209ENST00000583441 DLL1O00548 723 aa8.15□□□□□ -1.1
SMCHD1-209ENST00000583441 TYRO3Q06418 890 aa8.15□□□□□ -1.1
SMCHD1-209ENST00000583441 HSH2DQ96JZ2 352 aa8.15□□□□□ -1.1
SMCHD1-209ENST00000583441 PNMA5Q96PV4 448 aa8.15□□□□□ -1.1
SMCHD1-209ENST00000583441 SERTM1A2A2V5 107 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 F8W735 103 aaPredicted RBP8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 DEAF1O75398 565 aaPredicted RBP8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 CPB1P15086 417 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 GRIK5Q16478 980 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 PCSK7Q16549 785 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 FBLN7Q53RD9 439 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 ASIC4Q96FT7 647 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 KRTAP17-1Q9BYP8 105 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 FRRS1LQ9P0K9 344 aa8.14□□□□□ -1.11
SMCHD1-209ENST00000583441 GLB1P16278 677 aa8.13□□□□□ -1.11
SMCHD1-209ENST00000583441 BRPF1P55201 1214 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-209ENST00000583441 APBB1O00213 710 aa8.12□□□□□ -1.11
SMCHD1-209ENST00000583441 DHX15O43143 795 aaKnown RBP8.12□□□□□ -1.11
SMCHD1-209ENST00000583441 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-209ENST00000583441 LPIN3Q9BQK8 851 aa8.12□□□□□ -1.11
SMCHD1-209ENST00000583441 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-209ENST00000583441 NFIAQ12857 509 aa8.11□□□□□ -1.11
SMCHD1-209ENST00000583441 TBCELQ5QJ74 424 aa8.11□□□□□ -1.11
SMCHD1-209ENST00000583441 ELMSAN1Q6PJG2 1045 aa8.11□□□□□ -1.11
SMCHD1-209ENST00000583441 SLC9A9Q8IVB4 645 aa8.11□□□□□ -1.11
SMCHD1-209ENST00000583441 PLPP7Q8NBV4 271 aa8.11□□□□□ -1.11
SMCHD1-209ENST00000583441 SH3PXD2AQ5TCZ1 1133 aa8.1□□□□□ -1.11
SMCHD1-209ENST00000583441 C1orf53Q5VUE5 145 aa8.1□□□□□ -1.11
SMCHD1-209ENST00000583441 NFKB1P19838 968 aa8.09□□□□□ -1.11
SMCHD1-209ENST00000583441 ABI1Q8IZP0 508 aa8.09□□□□□ -1.11
SMCHD1-209ENST00000583441 ZNF280CQ8ND82 737 aa8.09□□□□□ -1.11
SMCHD1-209ENST00000583441 SUSD3Q96L08 255 aa8.09□□□□□ -1.11
SMCHD1-209ENST00000583441 PERM1Q5SV97 790 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 Q6ZS46 218 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 GSX2Q9BZM3 304 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 GOPCQ9HD26 462 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 ZNF358Q9NW07 568 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 HCN4Q9Y3Q4 1203 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 PCDHGA11Q9Y5H2 935 aa8.08□□□□□ -1.12
SMCHD1-209ENST00000583441 PRR19A6NJB7 356 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 PLAURQ03405 335 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 AGGF1Q8N302 714 aaeCLIP8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 MTMR14Q8NCE2 650 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 BANK1Q8NDB2 785 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 TTC9Q92623 222 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 CHMP3Q9Y3E7 222 aa8.07□□□□□ -1.12
SMCHD1-209ENST00000583441 CCINQ13939 588 aa8.06□□□□□ -1.12
SMCHD1-209ENST00000583441 DCAF11Q8TEB1 546 aa8.06□□□□□ -1.12
SMCHD1-209ENST00000583441 DBNDD2Q9BQY9 259 aa8.06□□□□□ -1.12
SMCHD1-209ENST00000583441 PHACTR1Q9C0D0 580 aa8.06□□□□□ -1.12
SMCHD1-209ENST00000583441 PSME1Q06323 249 aa8.05□□□□□ -1.12
SMCHD1-209ENST00000583441 RNF43Q68DV7 783 aa8.05□□□□□ -1.12
SMCHD1-209ENST00000583441 BTLAQ7Z6A9 289 aa8.05□□□□□ -1.12
SMCHD1-209ENST00000583441 UBL7Q96S82 380 aaPredicted RBP8.05□□□□□ -1.12
SMCHD1-209ENST00000583441 TRIM42Q8IWZ5 723 aa8.04□□□□□ -1.12
SMCHD1-209ENST00000583441 TNS4Q8IZW8 715 aa8.04□□□□□ -1.12
SMCHD1-209ENST00000583441 C7orf69Q9H7B7 122 aa8.04□□□□□ -1.12
SMCHD1-209ENST00000583441 ANGEL1Q9UNK9 670 aaKnown RBP8.04□□□□□ -1.12
SMCHD1-209ENST00000583441 EPHA4P54764 986 aa8.03□□□□□ -1.12
SMCHD1-209ENST00000583441 SMG9Q9H0W8 520 aaKnown RBP8.03□□□□□ -1.12
SMCHD1-209ENST00000583441 PSMA6P60900 246 aaKnown RBP8.02□□□□□ -1.13
SMCHD1-209ENST00000583441 ARMC10Q8N2F6 343 aa8.02□□□□□ -1.13
SMCHD1-209ENST00000583441 SRA1Q9HD15 236 aaKnown RBP8.02□□□□□ -1.13
SMCHD1-209ENST00000583441 HMX2A2RU54 273 aa8.01□□□□□ -1.13
SMCHD1-209ENST00000583441 DBX1A6NMT0 343 aa8.01□□□□□ -1.13
SMCHD1-209ENST00000583441 SPOCD1Q6ZMY3 1216 aa8.01□□□□□ -1.13
SMCHD1-209ENST00000583441 CEP41Q9BYV8 373 aa8.01□□□□□ -1.13
SMCHD1-209ENST00000583441 ZBTB42B2RXF5 422 aa8□□□□□ -1.13
SMCHD1-209ENST00000583441 JUNBP17275 347 aaPredicted RBP8□□□□□ -1.13
SMCHD1-209ENST00000583441 GTF2IP78347 998 aa8□□□□□ -1.13
SMCHD1-209ENST00000583441 MLLT1Q03111 559 aaPredicted RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms