RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CC2D2BQ6DHV5 1058 aa26.75■■□□□ 1.87
SHMT1-209ENST00000582653 SYNE4Q8N205 404 aa26.75■■□□□ 1.87
SHMT1-209ENST00000582653 ZNF277Q9NRM2 450 aaPredicted RBP26.75■■□□□ 1.87
SHMT1-209ENST00000582653 NTSR2O95665 410 aa26.74■■□□□ 1.87
SHMT1-209ENST00000582653 JMYQ8N9B5 988 aa26.74■■□□□ 1.87
SHMT1-209ENST00000582653 RPGRQ92834 1020 aaKnown RBP26.74■■□□□ 1.87
SHMT1-209ENST00000582653 SLC10A5Q5PT55 438 aa26.73■■□□□ 1.87
SHMT1-209ENST00000582653 PSMD1Q99460 953 aa26.73■■□□□ 1.87
SHMT1-209ENST00000582653 RIC1Q4ADV7 1423 aa26.73■■□□□ 1.87
SHMT1-209ENST00000582653 IARSP41252 1262 aaKnown RBP26.72■■□□□ 1.87
SHMT1-209ENST00000582653 GRIPAP1Q4V328 841 aa26.72■■□□□ 1.87
SHMT1-209ENST00000582653 COPS6Q7L5N1 327 aa26.72■■□□□ 1.87
SHMT1-209ENST00000582653 RBM17Q96I25 401 aaKnown RBP26.72■■□□□ 1.87
SHMT1-209ENST00000582653 L3MBTL3Q96JM7 780 aaPredicted RBP26.72■■□□□ 1.87
SHMT1-209ENST00000582653 CRAMP1Q96RY5 1269 aa26.72■■□□□ 1.87
SHMT1-209ENST00000582653 IQCA1LA6NCM1 817 aa26.71■■□□□ 1.87
SHMT1-209ENST00000582653 APAF1O14727 1248 aa26.71■■□□□ 1.87
SHMT1-209ENST00000582653 AIMP1Q12904 312 aaKnown RBP26.71■■□□□ 1.87
SHMT1-209ENST00000582653 NLRP3Q96P20 1036 aa26.71■■□□□ 1.87
SHMT1-209ENST00000582653 FZD9O00144 591 aa26.7■■□□□ 1.86
SHMT1-209ENST00000582653 CHADLQ6NUI6 762 aa26.7■■□□□ 1.86
SHMT1-209ENST00000582653 UTP14AQ9BVJ6 771 aaKnown RBP26.7■■□□□ 1.86
SHMT1-209ENST00000582653 DDX21Q9NR30 783 aaKnown RBP eCLIP26.7■■□□□ 1.86
SHMT1-209ENST00000582653 ZEB1P37275 1124 aaPredicted RBP26.69■■□□□ 1.86
SHMT1-209ENST00000582653 CCDC184Q52MB2 194 aa26.69■■□□□ 1.86
SHMT1-209ENST00000582653 HSP90AB3PQ58FF7 597 aa26.69■■□□□ 1.86
SHMT1-209ENST00000582653 XAGE3Q8WTP9 111 aa26.69■■□□□ 1.86
SHMT1-209ENST00000582653 CFAP44Q96MT7 982 aa26.68■■□□□ 1.86
SHMT1-209ENST00000582653 SNED1Q8TER0 1413 aa26.67■■□□□ 1.86
SHMT1-209ENST00000582653 POTEIP0CG38 1075 aa26.67■■□□□ 1.86
SHMT1-209ENST00000582653 POTEJP0CG39 1038 aa26.67■■□□□ 1.86
SHMT1-209ENST00000582653 TAF1DQ9H5J8 278 aaPredicted RBP26.67■■□□□ 1.86
SHMT1-209ENST00000582653 TCIRG1Q13488 830 aa26.66■■□□□ 1.86
SHMT1-209ENST00000582653 C3orf67Q6ZVT6 689 aa26.66■■□□□ 1.86
SHMT1-209ENST00000582653 JDP2Q8WYK2 163 aa26.66■■□□□ 1.86
SHMT1-209ENST00000582653 MBIPQ9NS73 344 aa26.66■■□□□ 1.86
SHMT1-209ENST00000582653 CHPF2Q9P2E5 772 aa26.66■■□□□ 1.86
SHMT1-209ENST00000582653 RNF123Q5XPI4 1314 aa26.65■■□□□ 1.86
SHMT1-209ENST00000582653 ZNF541Q9H0D2 1346 aa26.65■■□□□ 1.86
SHMT1-209ENST00000582653 HDGFL1Q5TGJ6 251 aa26.65■■□□□ 1.86
SHMT1-209ENST00000582653 NLRP10Q86W26 655 aa26.65■■□□□ 1.86
SHMT1-209ENST00000582653 HOXB7P09629 217 aa26.64■■□□□ 1.86
SHMT1-209ENST00000582653 LDHDQ86WU2 507 aa26.64■■□□□ 1.86
SHMT1-209ENST00000582653 PPEF1O14829 653 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-209ENST00000582653 DUSP27Q5VZP5 1158 aa26.63■■□□□ 1.85
SHMT1-209ENST00000582653 GPC2Q8N158 579 aa26.63■■□□□ 1.85
SHMT1-209ENST00000582653 HACL1Q9UJ83 578 aa26.63■■□□□ 1.85
SHMT1-209ENST00000582653 ZNF853P0CG23 659 aa26.62■■□□□ 1.85
SHMT1-209ENST00000582653 SCN4AP35499 1836 aa26.62■■□□□ 1.85
SHMT1-209ENST00000582653 TCERG1O14776 1098 aaKnown RBP26.61■■□□□ 1.85
SHMT1-209ENST00000582653 ZNF428Q96B54 188 aa26.61■■□□□ 1.85
SHMT1-209ENST00000582653 TMX4Q9H1E5 349 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-209ENST00000582653 ATP6V0A2Q9Y487 856 aa26.61■■□□□ 1.85
SHMT1-209ENST00000582653 BBOX1O75936 387 aa26.6■■□□□ 1.85
SHMT1-209ENST00000582653 EPHX2P34913 555 aa26.6■■□□□ 1.85
SHMT1-209ENST00000582653 EIF6P56537 245 aaKnown RBP26.6■■□□□ 1.85
SHMT1-209ENST00000582653 SLC51AQ86UW1 340 aa26.6■■□□□ 1.85
SHMT1-209ENST00000582653 PNMA8AQ86V59 439 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-209ENST00000582653 CREBZFQ9NS37 354 aa26.6■■□□□ 1.85
SHMT1-209ENST00000582653 DBF4Q9UBU7 674 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-209ENST00000582653 TRMT112Q9UI30 125 aaKnown RBP26.6■■□□□ 1.85
SHMT1-209ENST00000582653 ANKRD13DQ6ZTN6 518 aa26.59■■□□□ 1.85
SHMT1-209ENST00000582653 PLBD2Q8NHP8 589 aa26.59■■□□□ 1.85
SHMT1-209ENST00000582653 VPS33BQ9H267 617 aa26.59■■□□□ 1.85
SHMT1-209ENST00000582653 PCNTO95613 3336 aa26.59■■□□□ 1.85
SHMT1-209ENST00000582653 ELL2O00472 640 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-209ENST00000582653 HCLS1P14317 486 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-209ENST00000582653 LARGE2Q8N3Y3 721 aa26.58■■□□□ 1.85
SHMT1-209ENST00000582653 IFT57Q9NWB7 429 aa26.58■■□□□ 1.85
SHMT1-209ENST00000582653 ZNF316A6NFI3 1004 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-209ENST00000582653 ITGBL1O95965 494 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-209ENST00000582653 GNAI1P63096 354 aa26.57■■□□□ 1.84
SHMT1-209ENST00000582653 EAPPQ56P03 285 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-209ENST00000582653 SP8Q8IXZ3 490 aa26.57■■□□□ 1.84
SHMT1-209ENST00000582653 HYPKQ9NX55 129 aa26.57■■□□□ 1.84
SHMT1-209ENST00000582653 SH3TC1Q8TE82 1336 aa26.57■■□□□ 1.84
SHMT1-209ENST00000582653 PASKQ96RG2 1323 aa26.57■■□□□ 1.84
SHMT1-209ENST00000582653 CLEC11AQ9Y240 323 aa26.56■■□□□ 1.84
SHMT1-209ENST00000582653 ABCC4O15439 1325 aa26.56■■□□□ 1.84
SHMT1-209ENST00000582653 CALD1Q05682 793 aaKnown RBP26.55■■□□□ 1.84
SHMT1-209ENST00000582653 GJA3Q9Y6H8 435 aa26.55■■□□□ 1.84
SHMT1-209ENST00000582653 ANKRD36CQ5JPF3 1778 aa26.54■■□□□ 1.84
SHMT1-209ENST00000582653 DDX46Q7L014 1031 aaKnown RBP26.54■■□□□ 1.84
SHMT1-209ENST00000582653 ISCA1Q9BUE6 129 aa26.54■■□□□ 1.84
SHMT1-209ENST00000582653 RTFDC1Q9BY42 306 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-209ENST00000582653 C8orf58Q8NAV2 365 aa26.53■■□□□ 1.84
SHMT1-209ENST00000582653 SUPT20HQ8NEM7 779 aa26.53■■□□□ 1.84
SHMT1-209ENST00000582653 ATP5J2-PTCD1G3V325 749 aa26.52■■□□□ 1.84
SHMT1-209ENST00000582653 PPIP5K2O43314 1243 aa26.52■■□□□ 1.84
SHMT1-209ENST00000582653 COL4A5P29400 1685 aa26.52■■□□□ 1.84
SHMT1-209ENST00000582653 NIM1KQ8IY84 436 aa26.52■■□□□ 1.84
SHMT1-209ENST00000582653 TRIM28Q13263 835 aaKnown RBP26.51■■□□□ 1.83
SHMT1-209ENST00000582653 GRAPQ13588 217 aa26.51■■□□□ 1.83
SHMT1-209ENST00000582653 CNTROBQ8N137 903 aa26.51■■□□□ 1.83
SHMT1-209ENST00000582653 MPNDQ8N594 471 aa26.51■■□□□ 1.83
SHMT1-209ENST00000582653 GRAPLQ8TC17 118 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-209ENST00000582653 PHAXQ9H814 394 aaKnown RBP26.51■■□□□ 1.83
SHMT1-209ENST00000582653 AOC3Q16853 763 aa26.5■■□□□ 1.83
SHMT1-209ENST00000582653 DPP8Q6V1X1 898 aaPredicted RBP26.5■■□□□ 1.83
SHMT1-209ENST00000582653 LMOD1P29536 600 aaPredicted RBP26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms