RNA–Protein interactions for RNA: ENST00000581707.1

SREBF1-220, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 695 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-220ENST00000581707 SALL2Q9Y467 1007 aaPredicted RBP25.22■■□□□ 1.63
SREBF1-220ENST00000581707 TNRC6CQ9HCJ0 1690 aaKnown RBP25.22■■□□□ 1.63
SREBF1-220ENST00000581707 FER1L6Q2WGJ9 1857 aa25.21■■□□□ 1.63
SREBF1-220ENST00000581707 ALDH1B1P30837 517 aa25.21■■□□□ 1.63
SREBF1-220ENST00000581707 PRELPP51888 382 aa25.21■■□□□ 1.63
SREBF1-220ENST00000581707 CRY2Q49AN0 593 aa25.21■■□□□ 1.63
SREBF1-220ENST00000581707 RIC1Q4ADV7 1423 aa25.2■■□□□ 1.63
SREBF1-220ENST00000581707 NLRP10Q86W26 655 aa25.2■■□□□ 1.62
SREBF1-220ENST00000581707 TSPYL6Q8N831 410 aa25.2■■□□□ 1.62
SREBF1-220ENST00000581707 C7orf43Q8WVR3 580 aa25.2■■□□□ 1.62
SREBF1-220ENST00000581707 CCDC30Q5VVM6 783 aa25.19■■□□□ 1.62
SREBF1-220ENST00000581707 SLC10A5Q5PT55 438 aa25.18■■□□□ 1.62
SREBF1-220ENST00000581707 RPGRQ92834 1020 aaKnown RBP25.18■■□□□ 1.62
SREBF1-220ENST00000581707 RNF123Q5XPI4 1314 aa25.17■■□□□ 1.62
SREBF1-220ENST00000581707 WDR63Q8IWG1 891 aa25.17■■□□□ 1.62
SREBF1-220ENST00000581707 NLRP3Q96P20 1036 aa25.17■■□□□ 1.62
SREBF1-220ENST00000581707 TAOK3Q9H2K8 898 aa25.17■■□□□ 1.62
SREBF1-220ENST00000581707 PHAXQ9H814 394 aaKnown RBP25.17■■□□□ 1.62
SREBF1-220ENST00000581707 LTBP3Q9NS15 1303 aa25.16■■□□□ 1.62
SREBF1-220ENST00000581707 ZC3H4Q9UPT8 1303 aaKnown RBP25.16■■□□□ 1.62
SREBF1-220ENST00000581707 HOXA10P31260 410 aaPredicted RBP25.16■■□□□ 1.62
SREBF1-220ENST00000581707 CCDC93Q567U6 631 aa25.16■■□□□ 1.62
SREBF1-220ENST00000581707 TRMT112Q9UI30 125 aaKnown RBP25.16■■□□□ 1.62
SREBF1-220ENST00000581707 KDM2BQ8NHM5 1336 aa25.15■■□□□ 1.62
SREBF1-220ENST00000581707 KIF3CO14782 793 aa25.15■■□□□ 1.62
SREBF1-220ENST00000581707 GOLGA2Q08379 1002 aa25.15■■□□□ 1.62
SREBF1-220ENST00000581707 RBM17Q96I25 401 aaKnown RBP25.15■■□□□ 1.62
SREBF1-220ENST00000581707 C3orf67Q6ZVT6 689 aa25.14■■□□□ 1.62
SREBF1-220ENST00000581707 RIC3Q7Z5B4 369 aa25.14■■□□□ 1.62
SREBF1-220ENST00000581707 ISCA1Q9BUE6 129 aa25.14■■□□□ 1.62
SREBF1-220ENST00000581707 NMRK2Q9NPI5 230 aa25.14■■□□□ 1.62
SREBF1-220ENST00000581707 SH3TC1Q8TE82 1336 aa25.13■■□□□ 1.61
SREBF1-220ENST00000581707 ATP5J2-PTCD1G3V325 749 aa25.13■■□□□ 1.61
SREBF1-220ENST00000581707 TWISTNBQ3B726 338 aaPredicted RBP25.13■■□□□ 1.61
SREBF1-220ENST00000581707 OLFM4Q6UX06 510 aa25.13■■□□□ 1.61
SREBF1-220ENST00000581707 SYNE4Q8N205 404 aa25.13■■□□□ 1.61
SREBF1-220ENST00000581707 CRAMP1Q96RY5 1269 aa25.13■■□□□ 1.61
SREBF1-220ENST00000581707 DICER1Q9UPY3 1922 aaKnown RBP25.12■■□□□ 1.61
SREBF1-220ENST00000581707 HCLS1P14317 486 aaPredicted RBP25.12■■□□□ 1.61
SREBF1-220ENST00000581707 RTKN2Q8IZC4 609 aa25.12■■□□□ 1.61
SREBF1-220ENST00000581707 FANCIQ9NVI1 1328 aa25.12■■□□□ 1.61
SREBF1-220ENST00000581707 TRIM28Q13263 835 aaKnown RBP25.11■■□□□ 1.61
SREBF1-220ENST00000581707 ZNF428Q96B54 188 aa25.11■■□□□ 1.61
SREBF1-220ENST00000581707 STK31Q9BXU1 1019 aa25.11■■□□□ 1.61
SREBF1-220ENST00000581707 TIAM2Q8IVF5 1701 aa25.11■■□□□ 1.61
SREBF1-220ENST00000581707 FKBP4Q02790 459 aaKnown RBP eCLIP25.1■■□□□ 1.61
SREBF1-220ENST00000581707 GLTPD2A6NH11 291 aa25.09■■□□□ 1.61
SREBF1-220ENST00000581707 TCERG1O14776 1098 aaKnown RBP25.09■■□□□ 1.61
SREBF1-220ENST00000581707 DDX58O95786 925 aaKnown RBP25.09■■□□□ 1.61
SREBF1-220ENST00000581707 CC2D2BQ6DHV5 1058 aa25.08■■□□□ 1.61
SREBF1-220ENST00000581707 FAM89AQ96GI7 184 aa25.08■■□□□ 1.61
SREBF1-220ENST00000581707 RRAGCQ9HB90 399 aa25.08■■□□□ 1.61
SREBF1-220ENST00000581707 LAMB2P55268 1798 aa25.08■■□□□ 1.6
SREBF1-220ENST00000581707 PPEF1O14829 653 aaPredicted RBP25.06■■□□□ 1.6
SREBF1-220ENST00000581707 DPY19L2Q6NUT2 758 aa25.06■■□□□ 1.6
SREBF1-220ENST00000581707 MYD88Q99836 296 aa25.06■■□□□ 1.6
SREBF1-220ENST00000581707 SPINK5Q9NQ38 1064 aaPredicted RBP25.06■■□□□ 1.6
SREBF1-220ENST00000581707 ZNF277Q9NRM2 450 aaPredicted RBP25.06■■□□□ 1.6
SREBF1-220ENST00000581707 TOMM70O94826 608 aa25.05■■□□□ 1.6
SREBF1-220ENST00000581707 SLC4A2P04920 1241 aa25.05■■□□□ 1.6
SREBF1-220ENST00000581707 EXOSC9Q06265 439 aaKnown RBP25.05■■□□□ 1.6
SREBF1-220ENST00000581707 METTL22Q9BUU2 404 aaPredicted RBP25.05■■□□□ 1.6
SREBF1-220ENST00000581707 GRIPAP1Q4V328 841 aa25.04■■□□□ 1.6
SREBF1-220ENST00000581707 RTL5Q5HYW3 569 aaPredicted RBP25.04■■□□□ 1.6
SREBF1-220ENST00000581707 DDX46Q7L014 1031 aaKnown RBP25.04■■□□□ 1.6
SREBF1-220ENST00000581707 C16orf71Q8IYS4 520 aaPredicted RBP25.04■■□□□ 1.6
SREBF1-220ENST00000581707 MYH16Q9H6N6 1097 aa25.04■■□□□ 1.6
SREBF1-220ENST00000581707 MAP3K2Q9Y2U5 619 aa25.04■■□□□ 1.6
SREBF1-220ENST00000581707 ABCC4O15439 1325 aa25.04■■□□□ 1.6
SREBF1-220ENST00000581707 DDX60Q8IY21 1712 aaKnown RBP25.03■■□□□ 1.6
SREBF1-220ENST00000581707 VAMP4O75379 141 aa25.03■■□□□ 1.6
SREBF1-220ENST00000581707 KSR2Q6VAB6 950 aa25.03■■□□□ 1.6
SREBF1-220ENST00000581707 CCDC191Q8NCU4 936 aa25.03■■□□□ 1.6
SREBF1-220ENST00000581707 PSMD1Q99460 953 aa25.03■■□□□ 1.6
SREBF1-220ENST00000581707 TMX4Q9H1E5 349 aaPredicted RBP25.03■■□□□ 1.6
SREBF1-220ENST00000581707 SNED1Q8TER0 1413 aa25.03■■□□□ 1.6
SREBF1-220ENST00000581707 PI4KAP2A4QPH2 592 aa25.02■■□□□ 1.6
SREBF1-220ENST00000581707 BBOX1O75936 387 aa25.02■■□□□ 1.6
SREBF1-220ENST00000581707 G2E3Q7L622 706 aa25.02■■□□□ 1.6
SREBF1-220ENST00000581707 PI4KAP1Q8N8J0 262 aa25.02■■□□□ 1.6
SREBF1-220ENST00000581707 ZBTB38Q8NAP3 1195 aaPredicted RBP25.02■■□□□ 1.6
SREBF1-220ENST00000581707 ATP6V0A2Q9Y487 856 aa25.02■■□□□ 1.6
SREBF1-220ENST00000581707 IRS4O14654 1257 aaPredicted RBP25.01■■□□□ 1.59
SREBF1-220ENST00000581707 IARSP41252 1262 aaKnown RBP25.01■■□□□ 1.59
SREBF1-220ENST00000581707 CWC25Q9NXE8 425 aaPredicted RBP25.01■■□□□ 1.59
SREBF1-220ENST00000581707 CACNA1FO60840 1977 aa25.01■■□□□ 1.59
SREBF1-220ENST00000581707 VEGFAP15692 232 aaPredicted RBP25■■□□□ 1.59
SREBF1-220ENST00000581707 SLC51AQ86UW1 340 aa25■■□□□ 1.59
SREBF1-220ENST00000581707 CCER2I3L3R5 266 aa24.99■■□□□ 1.59
SREBF1-220ENST00000581707 TAF1P21675 1872 aa24.99■■□□□ 1.59
SREBF1-220ENST00000581707 GRAPQ13588 217 aa24.99■■□□□ 1.59
SREBF1-220ENST00000581707 SF3B3Q15393 1217 aaKnown RBP24.99■■□□□ 1.59
SREBF1-220ENST00000581707 RBM46Q8TBY0 533 aaKnown RBP24.99■■□□□ 1.59
SREBF1-220ENST00000581707 GRAPLQ8TC17 118 aaPredicted RBP24.99■■□□□ 1.59
SREBF1-220ENST00000581707 ZNF521Q96K83 1311 aa24.99■■□□□ 1.59
SREBF1-220ENST00000581707 PCCAP05165 728 aaPredicted RBP24.98■■□□□ 1.59
SREBF1-220ENST00000581707 HSP90B1P14625 803 aaKnown RBP24.98■■□□□ 1.59
SREBF1-220ENST00000581707 NEXNQ0ZGT2 675 aa24.98■■□□□ 1.59
SREBF1-220ENST00000581707 SP8Q8IXZ3 490 aa24.98■■□□□ 1.59
SREBF1-220ENST00000581707 DDNO94850 711 aaPredicted RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms